PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.7G268300.1.p

Common Name

SETIT_012046mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRAS

Protein Properties

Length: 608aa MW: 68357.1 Da PI: 6.3573

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G268300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	276	1.2e-84	237	601	11	373
GRAS 11 avssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 av+++d a++lL++++++as++gd +qRla++f+++L+arl++++s++ + + + +++ + +e l a++l+ ++ + k+ l + Seita.7G268300.1.p 237 AVAANDDMTASELLKQIKQHASETGDVTQRLAQCFAKGLEARLVGMGSQVWQLWQLRMADRLSIVELLEARNLYAAACSFNKVVLLFSTMT 327 8999*****************************************************9999************************ PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 Il+a+ g+ r+Hi+D+++ +G++W+ Ll+ LasR++gpp+++iT++g+p+ +e++ee+g rL+k A+e+gvpf+f + + k++e+++ Seita.7G268300.1.p 328 ILQAMVGKGRLHIVDYGMRYGFHWADLLRLLASREGGPPKVKITAIGPPNLRpcPTEQIEEIGYRLSKCAHEFGVPFNFYA-IRKKWEEVS 417 ********************************************999999***********************.7**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 +e+L+++ gE+l+Vn l+ +l+des ++ ++d vL+ +++++P +++ + ++++ ++s+l rf e + y+sa+fd ++a++pr+s Seita.7G268300.1.p 418 IEDLNTDAGEVLIVNDRLNFNSLMDESIFFDDpsPKDIVLHNIRKMRPAIFIQSIVNSSY-GSSYLSRFREVVFYFSAIFDLFDATIPRDS 507 ***********************977766699*******************9.6789********************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 + r+++E+ l+g + n++aceg++ +r e++++W++r ++aG++++pl+ ++++ k + +++ + + + e+ ++l++gW++r L++ Seita.7G268300.1.p 508 KLRVVLEQDLFGGLALNAIACEGTDLMNRPEKYKQWHARNQRAGLRQLPLKPSIVNALKDEVMRCYHRDFLICEDGQWLLQGWMGRILFAQ 598 **************************************************************999****************** PP GRAS 371 SaW 373 S W Seita.7G268300.1.p 599 STW 601 * PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.783	201	582	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.1E-82	237	601	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence Send to blast
MATTPDELFV EGLTEKSPQS PSVFLDVFSP KPDDRSEGCH HVPSDMMLPY ISRMLMEDDI 60 DDKPSDHPAL LQVQQPFAQI LSSPSFGSNH GDTEGANDLL QDSSGDERTL HLALSKGTYA 120 VGAFLKGMKE ANMLLPIANN GFRRDKLVNQ MVSESSNHSG AKKRYARDDH IEEGEARRTS 180 KSLMRVTEPK DTCAHEMLDD MMLRGTETSI IRCMEKLRIA MANGAEKTTR KGSRNAAVAA 240 NDDMTASELL KQIKQHASET GDVTQRLAQC FAKGLEARLV GMGSQVWQLW QLRMADRLSI 300 VELLEARNLY AAACSFNKVV LLFSTMTILQ AMVGKGRLHI VDYGMRYGFH WADLLRLLAS 360 REGGPPKVKI TAIGPPNLRP CPTEQIEEIG YRLSKCAHEF GVPFNFYAIR KKWEEVSIED 420 LNTDAGEVLI VNDRLNFNSL MDESIFFDDP SPKDIVLHNI RKMRPAIFIQ SIVNSSYGSS 480 YLSRFREVVF YFSAIFDLFD ATIPRDSKLR VVLEQDLFGG LALNAIACEG TDLMNRPEKY 540 KQWHARNQRA GLRQLPLKPS IVNALKDEVM RCYHRDFLIC EDGQWLLQGW MGRILFAQST 600 WVADDTS*

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence Send to blast

MATTPDELFV EGLTEKSPQS PSVFLDVFSP KPDDRSEGCH HVPSDMMLPY ISRMLMEDDI  60
DDKPSDHPAL LQVQQPFAQI LSSPSFGSNH GDTEGANDLL QDSSGDERTL HLALSKGTYA  120
VGAFLKGMKE ANMLLPIANN GFRRDKLVNQ MVSESSNHSG AKKRYARDDH IEEGEARRTS  180
KSLMRVTEPK DTCAHEMLDD MMLRGTETSI IRCMEKLRIA MANGAEKTTR KGSRNAAVAA  240
NDDMTASELL KQIKQHASET GDVTQRLAQC FAKGLEARLV GMGSQVWQLW QLRMADRLSI  300
VELLEARNLY AAACSFNKVV LLFSTMTILQ AMVGKGRLHI VDYGMRYGFH WADLLRLLAS  360
REGGPPKVKI TAIGPPNLRP CPTEQIEEIG YRLSKCAHEF GVPFNFYAIR KKWEEVSIED  420
LNTDAGEVLI VNDRLNFNSL MDESIFFDDP SPKDIVLHNI RKMRPAIFIQ SIVNSSYGSS  480
YLSRFREVVF YFSAIFDLFD ATIPRDSKLR VVLEQDLFGG LALNAIACEG TDLMNRPEKY  540
KQWHARNQRA GLRQLPLKPS IVNALKDEVM RCYHRDFLIC EDGQWLLQGW MGRILFAQST  600
WVADDTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-29	237	602	29	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G268300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978278.1	0.0	scarecrow-like protein 33
TrEMBL	A0A368S001	0.0	A0A368S001_SETIT; Uncharacterized protein
STRING	Si012046m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-102	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Seita.7G268300.1.p