PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G266200.1.p
Common NameSETIT_012228mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family RAV
Protein Properties Length: 275aa    MW: 29558.2 Da    PI: 7.4659
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G266200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.87.4e-103179155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        s+ykGV   + + rW A+I++      r +r++lg+   +  Aa+a++aa+++++g
  Seita.7G266200.1.p 31 SRYKGVVPQP-NARWGAQIYE------RhARVWLGTVADEAAAARAYDAAALRFRG 79
                        78****8777.89********......44**********99*************98 PP
2B354.81.8e-171422062383
                         .HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3  23 aeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                         ae+h    + + + ++ l +ed   g++W+++++y+ +s++yvlt+GW+ Fv+++gL +gD+v F+
  Seita.7G266200.1.p 142 AEKHfpplD-EAAPPVLLAFEDvAGGKVWRFRYSYWSSSQSYVLTRGWSCFVREKGLVAGDTVAFS 206
                         666666531.3345678999996677***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-53179IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-103186IPR016177DNA-binding domain
SMARTSM003806.3E-123293IPR001471AP2/ERF domain
PROSITE profilePS5103217.3323287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-133286IPR001471AP2/ERF domain
PROSITE profilePS5086311.025125227IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-22127208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-19128207IPR015300DNA-binding pseudobarrel domain
CDDcd100179.38E-11130205No hitNo description
SMARTSM010191.2E-8131217IPR003340B3 DNA binding domain
PfamPF023624.7E-14154206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSTSTQEVEQ LDWMDGDDDA AAASPRAQSS SRYKGVVPQP NARWGAQIYE RHARVWLGTV  60
ADEAAAARAY DAAALRFRGR GGAMAFLAAR PKAEVVDMLR KHTYDDELRQ ALRSGGGGDH  120
ALALVPRVAL FEKAVTPSDL HAEKHFPPLD EAAPPVLLAF EDVAGGKVWR FRYSYWSSSQ  180
SYVLTRGWSC FVREKGLVAG DTVAFSQAQA AVSSSTDDGE VDVKRRMFIE CRKRKRNDGG  240
AGHGDDCCAD GGARVVRLFG ANIAAAAIGA SCMC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2812920912104DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223235KRRMFIECRKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G266200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958127e-53FP095812.1 Phyllostachys edulis cDNA clone: bphyem125h21, full insert sequence.
GenBankFP0968357e-53FP096835.1 Phyllostachys edulis cDNA clone: bphyem207b07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806570.11e-133AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS73e-75Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A368S0080.0A0A368S008_SETIT; Uncharacterized protein
STRINGSi012228m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-49related to ABI3/VP1 1