PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G250800.1.p | ||||||||
Common Name | LOC101765898, SETIT_010139mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 438aa MW: 46018.6 Da PI: 6.9659 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.5 | 3.2e-05 | 327 | 364 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Seita.7G250800.1.p 327 RKEKLGDRITALQQLVAPF-----GKTDTASVLHETIEYIKFL 364 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.668 | 315 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.72E-11 | 325 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.48E-5 | 325 | 368 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.5E-8 | 325 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MGDHAEMLHA APAVVYTGGG AGAAPHGGWW TAASVPTATC STELAGFGTW SSALQAATSY 60 DMAVEGAKAK SATTASSESP GNNSSVTFQE PTGVADPVGI SAAVHQQPLA GYADWTHPYM 120 SSGATLHGFL QDGHQDMSSR TEQSPMDAST LMNPSSNNLA LQVQGHQQEH QLLSSFGSDL 180 LLSPTTPYGL QSSLLRSLLE PAAKPALPGF QQYDQYGQQI CQQASPAAAR FAPGAIREPL 240 QFTNDAPFWN SSAAGFGVPA AVPDQASVRS AVKPSPAPRA ATLTLKTVLE GVGESSSIIS 300 KKKASGEPAF KKPRLETPSP LPTFKVRKEK LGDRITALQQ LVAPFGKTDT ASVLHETIEY 360 IKFLHDQVGV LSAPYLKNGH HHQLPHLKSS SPEKSKDSHG EISLKGRGLC LVPISSTFAV 420 ASEVPVDFWT PFGANFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G250800.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975193 | 1e-126 | EU975193.1 Zea mays clone 484008 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976935.1 | 0.0 | transcription factor bHLH112 | ||||
TrEMBL | K3Y7E8 | 0.0 | K3Y7E8_SETIT; Uncharacterized protein | ||||
STRING | Si010139m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 6e-49 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G250800.1.p |
Entrez Gene | 101765898 |