PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G240100.1.p
Common NameLOC101760356, SETIT_010680mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 307aa    MW: 33178.6 Da    PI: 6.9349
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G240100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.58e-51111491128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhP+d+elv +yL++k++gk        ++ +vd++k+ePw+Lp ++  + +ewyfFs +d+kyatg+r+nrat+sgyWkatgkd
  Seita.7G240100.1.p  11 LPPGFRFHPRDDELVLDYLCRKLSGKGggAYGGIAMVDVDLNKCEPWELPDEACVGGREWYFFSLHDRKYATGQRTNRATRSGYWKATGKD 101
                         79************************9653333459999***********7666789********************************** PP

                 NAM  90 kevlskkgel.........vglkktLvfykgrapkgektdWvmheyrl 128
                         +++  ++++l         vg++ktLvfy+grap+g+kt+Wvmhe+r+
  Seita.7G240100.1.p 102 RPISISGRRLvagaggagvVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 149
                         ****983333555555566***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-563176IPR003441NAC domain
PROSITE profilePS5100554.59711176IPR003441NAC domain
PfamPF023659.7E-2612149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSLISMMEAR LPPGFRFHPR DDELVLDYLC RKLSGKGGGA YGGIAMVDVD LNKCEPWELP  60
DEACVGGREW YFFSLHDRKY ATGQRTNRAT RSGYWKATGK DRPISISGRR LVAGAGGAGV  120
VGMRKTLVFY QGRAPRGSKT EWVMHEFRVE GPAVAVAGRP CSPLKEDWVL CRVFYKSRTT  180
TAIPACPDET SSLLSGELIS LPLPQMPSAD AYLAFDHGAV AAIGGYYQQD DDAGLPASHH  240
QPALPLDKSL ASFRDLLSSM VEGGDGGGAV AKTELHQDWT EAAYAQQQGG VLLHSQPAWN  300
PFLSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-49817712169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G240100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9630310.0EU963031.1 Zea mays clone 247548 NAC domain-containing protein 21/22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976831.10.0NAC domain-containing protein 21/22
TrEMBLK3Y8Y80.0K3Y8Y8_SETIT; Uncharacterized protein
STRINGSi010680m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.16e-72NAC family protein