PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G235900.3.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28009.1 Da    PI: 9.626
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G235900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.2e-27959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ien +nrqvtfskRr g++KKA+EL +LCda++ viifs +g++yeyss
  Seita.7G235900.3.p  9 KKIENPTNRQVTFSKRRMGLFKKANELAILCDAQIGVIIFSGSGRMYEYSS 59
                        68***********************************************96 PP
2K-box578.4e-20851621491
               K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         +++  qe++++k+e + L+    +++GedL s s+++L +Leqq+e sl k+R +K+ell +q+ e++++e ++ ee+
  Seita.7G235900.3.p  85 QQKIIQEMTRMKDERNRLRIIMGQYMGEDLASFSVQDLSNLEQQMEFSLYKVRLRKQELLDQQLLEMRHREMRMAEEQ 162
                         68899********************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.357161IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-39160IPR002100Transcription factor, MADS-box
CDDcd002652.18E-39276No hitNo description
SuperFamilySSF554554.45E-30279IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-1681163IPR002487Transcription factor, K-box
PROSITE profilePS5129712.30785184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGKVELKK IENPTNRQVT FSKRRMGLFK KANELAILCD AQIGVIIFSG SGRMYEYSSP  60
PWRIANIFDR YLKAPSTRFE EMDIQQKIIQ EMTRMKDERN RLRIIMGQYM GEDLASFSVQ  120
DLSNLEQQME FSLYKVRLRK QELLDQQLLE MRHREMRMAE EQSGGFLCLM NPAARGQSQA  180
AEMVAAANPR PFPWWDAGAG GSGGQSSQRL HGRDAETSAA APQVHGYRLQ PLQPNLQDAN  240
LHGWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-17160160MEF2 CHIMERA
6byy_B9e-17160160MEF2 CHIMERA
6byy_C9e-17160160MEF2 CHIMERA
6byy_D9e-17160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G235900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0385320.0BT038532.1 Zea mays full-length cDNA clone ZM_BFb0284C04 mRNA, complete cds.
GenBankBT0691330.0BT069133.1 Zea mays full-length cDNA clone ZM_BFb0202H05 mRNA, complete cds.
GenBankHQ8587370.0HQ858737.1 Zea mays clone UT1435 MADS transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976800.10.0MADS-box transcription factor 31-like
SwissprotQ84NC23e-91MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A368S0K60.0A0A368S0K6_SETIT; Uncharacterized protein
STRINGPavir.Gb00526.1.p1e-155(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]