PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G224500.1.p | ||||||||
Common Name | SETIT_011853mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GRF | ||||||||
Protein Properties | Length: 374aa MW: 39984.9 Da PI: 8.8167 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.7 | 2.4e-24 | 107 | 151 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC +++ +++k+CErH+hrgr+rsrk++e+ Seita.7G224500.1.p 107 DPEPGRCRRTDGKKWRCAKEAAPDSKYCERHMHRGRNRSRKPVEA 151 79****************************************996 PP | |||||||
2 | QLQ | 61.2 | 2.9e-21 | 52 | 87 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ ++L++Q+l+yKyL+a++PvPp+Ll++i++ Seita.7G224500.1.p 52 PFTAAQYEELEHQALIYKYLVAGVPVPPDLLLPIRR 87 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.6E-12 | 51 | 87 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.269 | 52 | 87 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.2E-15 | 52 | 86 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.773 | 107 | 151 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.4E-21 | 108 | 150 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MAMPFASLSP AADHRPSSLL PFCRAAPLSA VGEADAQQHA MMSGRWAARP VPFTAAQYEE 60 LEHQALIYKY LVAGVPVPPD LLLPIRRGFV YHQPALGYGP YFGKKVDPEP GRCRRTDGKK 120 WRCAKEAAPD SKYCERHMHR GRNRSRKPVE AQLVTPPHAQ QQPPVAAAGF QNQSLYPAVL 180 AGNGGRAGGG GGGGGGLATG TFGLGSTAQL HMDSAAAYAT ATGGGSKDLR YSAYGVRSLS 240 DEHSQLMPAA MDTSMDNSWR LLPSQTSTFQ ATSYPLFGTL SGLDESTIAS LPKTQREPLS 300 FFGSDFVTAA KQENQTLRPF FDEWPKARDS WPELGDDNSL ASFSATQLSI SIPMATSDFS 360 NTSSRSPSGI PSR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 191 | GGRAGGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G224500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727858 | 0.0 | KJ727858.1 Zea mays clone pUT5949 GRF transcription factor (GRF5) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976689.1 | 0.0 | growth-regulating factor 3 | ||||
Swissprot | Q6AWY6 | 0.0 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | A0A368RYJ8 | 0.0 | A0A368RYJ8_SETIT; Uncharacterized protein | ||||
TrEMBL | K3YCA8 | 0.0 | K3YCA8_SETIT; Uncharacterized protein | ||||
STRING | Si011853m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2463 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-46 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G224500.1.p |