PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G222500.1.p
Common NameSETIT_012378mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 465aa    MW: 51116.1 Da    PI: 4.9147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G222500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11264310354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +a+ + Er RR+++N ++ +Lr l P++     +K++ a+i+  A+eYI +L
  Seita.7G222500.1.p 264 KANFATERERREQLNVKYRTLRMLFPNP-----TKNDRASIVGDAIEYIDEL 310
                         68899***********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.268261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-8262315No hitNo description
SuperFamilySSF474591.09E-11264327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-8264310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-7267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-9268323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MIPGGGYFEG SHDQCLMAGP FIHDSSQIPK GNGDTSIELQ KFKVPSFSTE ALSSPTIFSS  60
EDVGGTNLLQ HQLGIDLEQE APPGETASWD PSVCTIQDQS INHQFGGYSE NMLVEPEIQQ  120
YDAALYPNGA YTPAPDLLNL LRINAASAFP AATSVFGDAA LNGSNYLDLN GELAGVAAIP  180
DNGLMFTGDS SVHLGYHATQ PHLANDICHS LPQNYGLFPG EDEREVMIGA GSLGDLFQEV  240
DDRQFDSVLE CRRGKGEFSK GKGKANFATE RERREQLNVK YRTLRMLFPN PTKNDRASIV  300
GDAIEYIDEL NRTVKELKIL VEQKRHGNNK EKRIKLDHQA AADGESSSVK PIRDDQDNQL  360
IGAIRSSWVQ RRSKECHVDV RIVDDEVNIK LTEKKKDNSL FHAAKVLDEF QLDLIHAVGG  420
VIGDHHIFMF NTKVPEGSSV YACAVAKRLL EAVDAQRQTF NIFN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G222500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684519.10.0transcription factor EAT1
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLA0A368RYQ20.0A0A368RYQ2_SETIT; Uncharacterized protein
STRINGSi012378m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.15e-57bHLH family protein