PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G203300.1.p | ||||||||
Common Name | LOC101772100, SETIT_009396mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 794aa MW: 85333.8 Da PI: 6.212 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.4 | 9e-22 | 101 | 157 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q+++Le++F+++++p++++r+eL+k+lgL+ rqVk+WFqNrR+++k+ Seita.7G203300.1.p 101 KKRYHRHTPQQIHQLEAVFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMKN 157 678899************************************************995 PP | |||||||
2 | START | 171.7 | 4.7e-54 | 310 | 536 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 la +a++elvk+a+ +ep+Wv s+ e +n +e+ ++f++ + + +ea+r+sg+v ++a lve ++d +W+ ++ Seita.7G203300.1.p 310 LAMRAMDELVKMAQMNEPLWVPSVsspgsptmETLNWKEYSKTFSPCVGlkpigFVSEASRESGIVAIDSAALVEFFMDEV-RWSDMFSci 399 6789******************9999888888888888888888775559*******************************.********* PP ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS START 78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159 ka+t+e is g gal lm+aelq+lsplvp R+++f+R++ ql +g+w++vdvS+d + + + +++lpSg+++++ +n Seita.7G203300.1.p 400 vaKASTIEEISAGavgsrdGALLLMQAELQVLSPLVPrREVTFLRFCNQLAEGVWAVVDVSIDGLERDQCLVTNMNCRRLPSGCVVQEIPN 490 ***************************************************************98887778889999************** PP CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g +kvtwveh+++ ++++h+l+++l+ sgla+ga +w+atlqrqce+ Seita.7G203300.1.p 491 G-CKVTWVEHTEYHEASVHQLYQPLLCSGLAFGAGRWLATLQRQCEC 536 *.*******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 87 | 160 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.04E-21 | 89 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.398 | 98 | 158 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-22 | 99 | 162 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.86E-21 | 100 | 159 | No hit | No description |
Pfam | PF00046 | 3.2E-19 | 101 | 156 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 8.3E-5 | 129 | 138 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 133 | 156 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.3E-5 | 138 | 154 | IPR000047 | Helix-turn-helix motif |
PROSITE profile | PS50848 | 43.152 | 300 | 539 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.2E-30 | 301 | 536 | No hit | No description |
CDD | cd08875 | 6.17E-107 | 304 | 535 | No hit | No description |
SMART | SM00234 | 7.8E-40 | 309 | 536 | IPR002913 | START domain |
Pfam | PF01852 | 6.2E-46 | 310 | 536 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.53E-14 | 565 | 786 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 794 aa Download sequence Send to blast |
MSFGDLLGGA GDAAGAPYPP YGVFASSPAL PLAVADAGRR RGGSGERAGS VAHGGGNAKD 60 APEADDGSRS PIGDHIDVVL VCGGGEDDDE DGEAANPRKR KKRYHRHTPQ QIHQLEAVFK 120 ECPHPDEKQR AELSKRLGLE PRQVKFWFQN RRTQMKNQME RHENALLKQE NDKLRAENLS 180 IRGAMRDTVC GGCGGPALLG DMSLEEHHLR LENARLRDEL TRVCALTAKF IGKPISTMAL 240 APVQQLHPMP GSSLDLAVTC VGSVPPSTMP VSTISELAGS VSSQMGTVIT PMATAPSAMT 300 SIDKSMFVQL AMRAMDELVK MAQMNEPLWV PSVSSPGSPT METLNWKEYS KTFSPCVGLK 360 PIGFVSEASR ESGIVAIDSA ALVEFFMDEV RWSDMFSCIV AKASTIEEIS AGAVGSRDGA 420 LLLMQAELQV LSPLVPRREV TFLRFCNQLA EGVWAVVDVS IDGLERDQCL VTNMNCRRLP 480 SGCVVQEIPN GCKVTWVEHT EYHEASVHQL YQPLLCSGLA FGAGRWLATL QRQCECLAIL 540 MSSVAVPEHD SSAVPLEGKR SLLKLAHRMM ENFGAGVSGS SAEWSKLDGL TGSMRKDVRV 600 MVRNSVDEPG VPPGVVLSAA TAVWMPVTPE RLFNFLRNEG LRAEWDILSN GGPMQQIVRI 660 AKGQLDGNSV TLLRADHTNT HLNSILILQE TCTDKSGAMV VYAPVDFPAM QLVMGGGDST 720 NVALLPSGFA ILPGRSCTGG VGHKTSGALL TVAFQILVNS QPTAKLTMES VDTVYSLISC 780 TIEKIKAALH CEV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 102 | PRKRKKR |
2 | 97 | 101 | RKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G203300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978185.1 | 0.0 | homeobox-leucine zipper protein ROC4 | ||||
Swissprot | Q7Y0V9 | 0.0 | ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4 | ||||
TrEMBL | K3Y5A8 | 0.0 | K3Y5A8_SETIT; Uncharacterized protein | ||||
STRING | Si009396m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G203300.1.p |
Entrez Gene | 101772100 |
Publications ? help Back to Top | |||
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