PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G202300.2.p | ||||||||
Common Name | SETIT_010443mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 374aa MW: 37159 Da PI: 8.4823 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.3e-39 | 76 | 137 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Seita.7G202300.2.p 76 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 137 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 72 | 134 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-33 | 78 | 134 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.059 | 80 | 134 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 82 | 118 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MDAAHWQQSL GLVKPMEEML MAANAGAAAA NTGQGSNPNP PAPAPSSVPG GGALRAGAPP 60 AVAGAGSTER RARPQKEKAL NCPRCNSTNT KFCYYNNYSL QQPRYFCKTC RRYWTEGGSL 120 RNVPVGGGSR KNKRSSSSSA SASTSASVTS SSMASTAGAA SKNPKLAHEG AQDLNLAFPH 180 HSGLHAPEFG AFPSLESSSV CNSGGAMASN GRGGGGGGAG PAVGALSAME LLRSSGCYMP 240 LQMPMHMPGD YAAGGFALGE FRAPPPSQSV LGFSLDAHGP GPGAAAAGYG SSAGLQGVPE 300 NAGRLLFPFE DLKPPVSSGG GGVATGASGG DGDGNSGHPQ FDHNKDQGGG APSAGHDPPG 360 FWNGMIGGSG ASW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G202300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976523.1 | 0.0 | dof zinc finger protein 1 isoform X2 | ||||
Swissprot | Q9SXG8 | 1e-135 | DOF1_ORYSJ; Dof zinc finger protein 1 | ||||
TrEMBL | A0A368RY15 | 0.0 | A0A368RY15_SETIT; Uncharacterized protein | ||||
STRING | Si010443m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-42 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G202300.2.p |
Publications ? help Back to Top | |||
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