PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.7G202300.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 388aa MW: 38482.5 Da PI: 9.0823

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G202300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.5e-39	90	151	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Seita.7G202300.1.p 90 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 151 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	86	148	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	92	148	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	94	148	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	96	132	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MCSRSSSGST TATHNPTRAQ TKSLGLVKPM EEMLMAANAG AAAANTGQGS NPNPPAPAPS 60 SVPGGGALRA GAPPAVAGAG STERRARPQK EKALNCPRCN STNTKFCYYN NYSLQQPRYF 120 CKTCRRYWTE GGSLRNVPVG GGSRKNKRSS SSSASASTSA SVTSSSMAST AGAASKNPKL 180 AHEGAQDLNL AFPHHSGLHA PEFGAFPSLE SSSVCNSGGA MASNGRGGGG GGAGPAVGAL 240 SAMELLRSSG CYMPLQMPMH MPGDYAAGGF ALGEFRAPPP SQSVLGFSLD AHGPGPGAAA 300 AGYGSSAGLQ GVPENAGRLL FPFEDLKPPV SSGGGGVATG ASGGDGDGNS GHPQFDHNKD 360 QGGGAPSAGH DPPGFWNGMI GGSGASW*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MCSRSSSGST TATHNPTRAQ TKSLGLVKPM EEMLMAANAG AAAANTGQGS NPNPPAPAPS  60
SVPGGGALRA GAPPAVAGAG STERRARPQK EKALNCPRCN STNTKFCYYN NYSLQQPRYF  120
CKTCRRYWTE GGSLRNVPVG GGSRKNKRSS SSSASASTSA SVTSSSMAST AGAASKNPKL  180
AHEGAQDLNL AFPHHSGLHA PEFGAFPSLE SSSVCNSGGA MASNGRGGGG GGAGPAVGAL  240
SAMELLRSSG CYMPLQMPMH MPGDYAAGGF ALGEFRAPPP SQSVLGFSLD AHGPGPGAAA  300
AGYGSSAGLQ GVPENAGRLL FPFEDLKPPV SSGGGGVATG ASGGDGDGNS GHPQFDHNKD  360
QGGGAPSAGH DPPGFWNGMI GGSGASW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G202300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976522.1	0.0	dof zinc finger protein 1 isoform X1
Swissprot	Q9SXG8	1e-129	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A368RY07	0.0	A0A368RY07_SETIT; Uncharacterized protein
STRING	Si010443m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-42	Dof family protein

Link Out ? help Back to Top
Phytozome	Seita.7G202300.1.p

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]