PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G201000.1.p
Common NameLOC101763458, SETIT_009633mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 608aa    MW: 62555.7 Da    PI: 8.5699
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G201000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0592114123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k F r  nL+ H r H
  Seita.7G201000.1.p  92 FVCEVCNKGFQREQNLQLHRRGH 114
                         89*******************88 PP
2zf-C2H211.50.0009169191123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k++  +s+ k H + +
  Seita.7G201000.1.p 169 WKCDKCSKRYAVQSDWKAHSKIC 191
                         58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-791114No hitNo description
Gene3DG3DSA:3.30.160.608.4E-691114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004192114IPR015880Zinc finger, C2H2-like
PfamPF121714.0E-592114IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09492114IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.43E-7164189No hitNo description
SMARTSM00355140169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MASNSSAAAA AAFFGIRDGD QQDQIKPLIS PQQQQLAAAL PGVAGAAPAP ATGQGAPAAA  60
AQPPPKKKRT LPDPDAEVIA LSPKTLLATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL  120
KQKNPLQAQR RRVYLCPEPT CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV  180
QSDWKAHSKI CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARLPPT SLSSLTGHLY  240
GATNAGNMAL SLSQVGSNLT STLQDGGHHH HHHHHHPSPE LLRLAATAGG GGSSIAARLD  300
HLLSPASGAS AFRPPPQAPP SSAAFFLNAA AAAAGQDFGD DGGNGPHSFM QTKPFHGLMQ  360
LPDLQGNGAG GPGGSAPGLF NLGFFANNGN SSGSSHEHAS QGLMNNDQFS GGAGGGGGSE  420
ASAAGIFGGN FVGGGDHVPT PGLYGDQSTM LPQMSATALL QKAAQMGATS SANGAASMFR  480
GFVGSSPHGR PATPHMEQSE ANLNDLMNSL AGGGVGAAGI FGGSNGGGGG GGGAGMFDPR  540
QLCDMEHHEV KFGQGGGDMT RDFLGVGGGG IVRGISTPRG DHQSSSDMSS LEAEMKSASS  600
FNGGRMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34165234370Zinc finger protein JACKDAW
5b3h_F1e-34165234370Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G201000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976512.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLK3Y5Z40.0K3Y5Z4_SETIT; Uncharacterized protein
STRINGSi009633m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-105indeterminate(ID)-domain 12