PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G190000.1.p | ||||||||
Common Name | LOC101760776, SETIT_010262mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | SBP | ||||||||
Protein Properties | Length: 402aa MW: 40417 Da PI: 9.4285 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.3 | 3.4e-41 | 124 | 200 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+++l+ akeyhrrhkvCe+hskap v+v g eqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk++ Seita.7G190000.1.p 124 RCQVEGCHMELAGAKEYHRRHKVCEAHSKAPRVVVLGAEQRFCQQCSRFHAISEFDDAKRSCRRRLAGHNERRRKSN 200 6**************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.1E-34 | 118 | 186 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.3 | 122 | 199 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-38 | 123 | 202 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.7E-32 | 125 | 198 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MEGNGGGGGS GSGSAAPPWD LGVHWAPAAS PYPPQPPFVP RPSGGATSHY HQQELTCLKL 60 GKRPCCWAGA AGGSQVSLQG GAGLVHGNGS AAGAGGASGA AAAEGRRKEK QAAAGASGAA 120 AVARCQVEGC HMELAGAKEY HRRHKVCEAH SKAPRVVVLG AEQRFCQQCS RFHAISEFDD 180 AKRSCRRRLA GHNERRRKSN ASEAMARSAA HPHGMAPFGH GFLPPPCGLP ASPAGALSLL 240 SSARGAPWLV PAAPDISARS SAALDELIAE NRAALLAWQF FSSSDRPAPG RHLAPPSSSV 300 GRALTPAEQA AGWHHPHDGA GAGGGGRYYH EAAASSGHTT LDLMQTAAAA TTVASAGAPP 360 FRPVPERAAA ARPPRAKDGD AAGCSSDAWA PAGGGGGARA L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-32 | 115 | 198 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00290 | DAP | Transfer from AT2G33810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G190000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054654 | 1e-127 | BT054654.2 Zea mays full-length cDNA clone ZM_BFb0036O05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978167.1 | 0.0 | squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q01JD1 | 1e-115 | SPL7_ORYSI; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | K3Y7S1 | 0.0 | K3Y7S1_SETIT; Uncharacterized protein | ||||
STRING | Si010262m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10303 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 3e-35 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G190000.1.p |
Entrez Gene | 101760776 |