PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G188700.1.p | ||||||||
Common Name | SETIT_012254mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 23764.1 Da PI: 5.3051 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 46 | 95 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Seita.7G188700.1.p 46 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 95 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.919 | 46 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 46 | 104 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-36 | 46 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 46 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-12 | 46 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-11 | 47 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.08E-30 | 47 | 105 | No hit | No description |
PRINTS | PR00367 | 9.9E-11 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDTDDTHEPA SPTSASSSSS SSSASSSSQA QAPKKRARKD GSRHPTYRGV RMRSWGKWVS 60 EIREPRKKSR IWLGTFATAE MAARAHDVAA LAIKGRGAHL NFPEHAHLLP RPASASPKDV 120 QAAATLAAAA DFPPPPPPSS SSADAGANAK SPESSSSDDA SAAASPPHEA TPQDAEPDPD 180 DALFDLPDLL LDLRCCGPSS WAVDDDMAVS AGGAFRLIEE PLLWEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-18 | 37 | 108 | 5 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G188700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU965306 | 1e-126 | EU965306.1 Zea mays clone 285154 dehydration-responsive element-binding protein 1C mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976435.1 | 1e-158 | ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q8LBQ7 | 1e-49 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | K3YDE9 | 1e-157 | K3YDE9_SETIT; Uncharacterized protein | ||||
STRING | Si012254m | 1e-158 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35700.1 | 3e-44 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G188700.1.p |
Publications ? help Back to Top | |||
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