PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G188500.1.p
Common NameLOC101762516, SETIT_010703mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 302aa    MW: 31115.8 Da    PI: 4.9288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G188500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19115165155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Seita.7G188500.1.p 115 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 165
                         57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.39E-31115174No hitNo description
PfamPF008471.8E-13115165IPR001471AP2/ERF domain
PROSITE profilePS5103224.118116173IPR001471AP2/ERF domain
SMARTSM003805.0E-37116179IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22116174IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-32116174IPR001471AP2/ERF domain
PRINTSPR003677.2E-11117128IPR001471AP2/ERF domain
PRINTSPR003677.2E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDMEANVTHA PTISSSSSSS SSSSTSSSSC LVNGAPQEVP KNSKTTNKRK RASSPDSQEV  60
EANGSTGSDG HQGEESSCCC STEDNAVASG GSKAQAASAA GGAARSSSRS GYKHPSYRGV  120
RRRSWGKWVS EIREPRKKSR IWLGTFPTAE MAARAHDVAA LAIKGRAAHL NFPDRAHELP  180
RPASTSPADI QAAAAQAAAT AADAPCEASP SSSPSPSPSS SAELPSSPAA DETPEAACCP  240
ETAAHGDGEQ GQDNALFDLP DLLLDLRDGL WWPPVWSGPM AAEEYDGGDA VGMHEPLLWA  300
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18111173972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G188500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563381e-127EU956338.1 Zea mays clone 1560970 dehydration-responsive element-binding protein 1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976433.10.0ethylene-responsive transcription factor TINY
SwissprotQ8LBQ72e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLK3Y9110.0K3Y911_SETIT; Uncharacterized protein
STRINGSi010703m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]