PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G188300.1.p
Common NameLOC101759143, SETIT_012032mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 342aa    MW: 36374.4 Da    PI: 9.0457
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G188300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.3e-112671146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        +g+W +eEd  l++ v+ +G+++W++I ++  + Rt+k+c++rw +
  Seita.7G188300.1.p 26 KGPWMAEEDAVLLEHVRAHGPRDWSSIRSKGLLPRTGKSCRLRWVN 71
                        79*************************8876677**********87 PP
2Myb_DNA-binding40.75.5e-1382122345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++++E+   +++ +q+G++ W++Ia +++ gRt++++k++w 
  Seita.7G188300.1.p  82 KFSADEERVVLELQAQFGNK-WARIATYLP-GRTDNDVKNFWS 122
                         79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.5772173IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-182374IPR009057Homeodomain-like
SuperFamilySSF466895.08E-2624121IPR009057Homeodomain-like
SMARTSM007171.1E-92575IPR001005SANT/Myb domain
CDDcd001672.05E-102873No hitNo description
PfamPF139214.0E-102979No hitNo description
PROSITE profilePS5129419.66274129IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-1775127IPR009057Homeodomain-like
SMARTSM007172.2E-1179127IPR001005SANT/Myb domain
CDDcd001675.14E-1082121No hitNo description
PfamPF002492.8E-1182122IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MARAPGGARR RGGRRDAAGG GAAVRKGPWM AEEDAVLLEH VRAHGPRDWS SIRSKGLLPR  60
TGKSCRLRWV NKLRPNLKTG CKFSADEERV VLELQAQFGN KWARIATYLP GRTDNDVKNF  120
WSTRQKRLAR LLRAPLPAPS SRSTRAKAPA AASSLQSRPA AVGPCLDRVP FGSSSSGVHP  180
CSAATPFMDT QNAALIQYDQ AAGSGLLGFN GALPPFAPVA DSHACSSSSN AGPLLLPRLP  240
FDEPPYPLLD YPGMPEGWNM APGGFVNAGA MDDLAYQELL PMMTQPAPMI FPFFGTGCAQ  300
GGVKAEPPDA PDFFDDLPPD MFDSLDQVPP PLSPPATSSG F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-262612727126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G188300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630005e-51AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAL7316135e-51AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149605e-51AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126125e-51CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552185e-51CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978165.10.0probable transcription factor MYB58
SwissprotQ0JB891e-108MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLK3YCT20.0K3YCT2_SETIT; Uncharacterized protein
STRINGSi012032m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-61MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]