PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G186400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 344aa    MW: 36187.5 Da    PI: 4.5772
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G186400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-20148199256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  Seita.7G186400.1.p 148 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 199
                         8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-32147207IPR001471AP2/ERF domain
PROSITE profilePS5103224.105148206IPR001471AP2/ERF domain
CDDcd000189.05E-30148207No hitNo description
PfamPF008472.4E-14148198IPR001471AP2/ERF domain
SMARTSM003804.9E-37148212IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23148207IPR016177DNA-binding domain
PRINTSPR003671.8E-13149160IPR001471AP2/ERF domain
PRINTSPR003671.8E-13188208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAFAGDADGF ALDFIREHLL GGGCGGVAAV DSPVDSDDVD VTIPVLPAEP EFEPTSFLPL  60
EQEQHHGYMG MDLTHEYMGC GAPAVGEAAA AFPEQEPAAP VIIKFGSQSS SPVRPPLTIA  120
VPPTSYAWAA TASAAAPAVA EAVEDYRKYR GVRQRPWGKY AAEIRDPKRR GSRVWLGTYD  180
TPVEAARAYD RAAFRMRGAK AILNFPNEVG TRGADLWAPP PAPAAKAATA ANKRKRQQPE  240
DTDDVEVVAV VNKAVKVEVP SSSSTQVSSS TTSPSSMSTR ETTASSTVTS PETTEAGAGA  300
EWLPVTPSSG SWEQYWEALL GGLPPLSPLS PIPTLGFPQL PVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-26147211468ATERF1
3gcc_A5e-26147211468ATERF1
5wx9_A9e-261482081474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G186400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275251e-109KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976417.10.0ethylene-responsive transcription factor ERF105
TrEMBLA0A368RYZ30.0A0A368RYZ3_SETIT; Uncharacterized protein
STRINGSi011648m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-33ethylene responsive element binding factor 5