PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G185800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 207aa MW: 22503.7 Da PI: 11.5074 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 25.5 | 3.5e-08 | 21 | 82 | 1 | 66 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 +Wt +e+la +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + ++ Seita.7G185800.2.p 21 CWTTDETLAVARAYTARRLAVGREHLTSADWAAVAAAAP----SKTARQCRHKVEKLRRRLRSSRR 82 8*********************************99865....689**************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.1E-6 | 20 | 83 | No hit | No description |
PROSITE profile | PS50090 | 5.993 | 22 | 74 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MVSSSPSPPA PASGRRVPPP CWTTDETLAV ARAYTARRLA VGREHLTSAD WAAVAAAAPS 60 KTARQCRHKV EKLRRRLRSS RRRPCPLLDA IDLLDGPSPP FFSKSQSRSP SLSPSPPPAV 120 SPPSPPSPPA SPPRKRRRDD AGDEDGLSDV VGALRAIGEG FLRAEERRME AAREAQRMRM 180 EMALRHLDAQ RRLMDALVGR IVDALE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 77 | KLRRRLR |
2 | 72 | 78 | LRRRLRS |
3 | 133 | 137 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G185800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066046 | 0.0 | BT066046.2 Zea mays full-length cDNA clone ZM_BFb0189B18 mRNA, complete cds. | |||
GenBank | DQ245467 | 0.0 | DQ245467.1 Zea mays clone 15810 mRNA sequence. | |||
GenBank | KJ727946 | 0.0 | KJ727946.1 Zea mays clone pUT6044 trihelix transcription factor (THX31) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976415.1 | 1e-140 | actin cytoskeleton-regulatory complex protein pan1 | ||||
TrEMBL | A0A368RX47 | 1e-139 | A0A368RX47_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G320827_P01 | 1e-93 | (Zea mays) |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G185800.2.p |