PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G184600.1.p | ||||||||
Common Name | SETIT_010550mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 259aa MW: 28866.2 Da PI: 5.5584 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.9e-19 | 58 | 111 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le++F+ + ++ +e+ eLA++lgL+ rqV +WFqN+Ra+++ Seita.7G184600.1.p 58 KRRFTEEQIRSLESMFHAhQAKLEPREKVELARELGLQPRQVAIWFQNKRARWR 111 458**************989*********************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.3 | 2.4e-39 | 56 | 149 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 e+krr+++eq+++LE++F++++ kLep++KvelareLglqprqva+WFqn+RAR+++kqlE+dy+aL++++dal+++ e L++e+ +L+++ Seita.7G184600.1.p 56 ERKRRFTEEQIRSLESMFHAHQaKLEPREKVELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRAKFDALHARVEFLKQEKLALTTQ 146 69*******************99******************************************************************99 PP HD-ZIP_I/II 91 lke 93 l+e Seita.7G184600.1.p 147 LHE 149 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.33E-18 | 46 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.508 | 52 | 113 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-19 | 55 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.79E-18 | 57 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-19 | 58 | 120 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-16 | 58 | 111 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.6E-6 | 84 | 93 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 88 | 111 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.6E-6 | 93 | 109 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.7E-13 | 113 | 154 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDRPDHHQHQ FYMPLPVQQQ QQQLCAPMMD EQASFLAARG GGGRGGSGGT VAGKGERKRR 60 FTEEQIRSLE SMFHAHQAKL EPREKVELAR ELGLQPRQVA IWFQNKRARW RSKQLEHDYA 120 ALRAKFDALH ARVEFLKQEK LALTTQLHEL SERLREREDR AGSGVAATAS SSSCNGGGVV 180 GEEAEDDKRN VVLGCVDMEP PESCVLGGAC ATPADVSVES ECDDHHHHLD YDDGFPESFC 240 ATPELWEPWP LVEWNAVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G184600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728250 | 0.0 | KJ728250.1 Zea mays clone pUT6527 HB transcription factor (HB66) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976404.1 | 0.0 | homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q01IK0 | 1e-98 | HOX22_ORYSI; Homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q7XUJ5 | 1e-98 | HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22 | ||||
TrEMBL | A0A368RX29 | 0.0 | A0A368RX29_SETIT; Uncharacterized protein | ||||
STRING | Si010550m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 6e-33 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G184600.1.p |