PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G184300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 344aa    MW: 37615.7 Da    PI: 9.464
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G184300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix110.41.1e-3494179187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r +++ r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+qlea
  Seita.7G184300.1.p  94 RWPKTEVHALIQLRMDLDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLEA 179
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.2E-491153IPR001005SANT/Myb domain
PROSITE profilePS500907.35293151IPR017877Myb-like domain
PfamPF138373.6E-2493180No hitNo description
CDDcd122035.78E-3094158No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MPVQTPPPPK QPPRQPQHPP PPSPQATTPQ SKPISAAPLQ QQPQETAAHR DAGTPRSAPP  60
TSGASLELAP PVTTEQHVDS GLGGGDGGAA SSSRWPKTEV HALIQLRMDL DMRYQETGPK  120
GPLWEEISSG MRRLGYNRSS KRCKEKWENI NKYYKKVKES NKKRPEDSKT CPYFHQLEAI  180
YNRKHLRSIG AASASSVAIA GAPPALPAEQ ANPTRQELEG KNINDDRGTT EDRAQAHRSR  240
TAMARKRRRR RPRSTLTAPE DIVRELNEQP PREFTTDETD SDEMGDEYTD GEEGEDDGKM  300
QYRIQFQRPN SGGTNSAPPA PAPTTAAAPA TSAPTSTFLA VVR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244248RKRRR
2244250RKRRRRR
3245250KRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G184300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825673.11e-123trihelix transcription factor GTL1-like isoform X1
RefseqXP_025825674.11e-123trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A368RXD00.0A0A368RXD0_SETIT; Uncharacterized protein
STRINGSi012121m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-39Trihelix family protein