PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G179800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 369aa    MW: 39373.5 Da    PI: 8.7028
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G179800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-1692139148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W +eEd+llvd v+  G+g+W+  ++  g++R++k+c++rw +yl
  Seita.7G179800.1.p  92 KGPWAPEEDKLLVDFVQANGPGNWRMLPKLAGLNRCGKSCRLRWTNYL 139
                         79********************************************97 PP
2Myb_DNA-binding53.17.3e-17145190148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+eE+  +v++++  G++ W+ Ia+ ++ gRt++++k++w+++l
  Seita.7G179800.1.p 145 RGPFTPEEHNSIVQLHAVVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 190
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.25687139IPR017930Myb domain
SuperFamilySSF466891.68E-3089186IPR009057Homeodomain-like
SMARTSM007171.5E-1291141IPR001005SANT/Myb domain
PfamPF002493.1E-1492139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2293146IPR009057Homeodomain-like
CDDcd001673.79E-994139No hitNo description
PROSITE profilePS5129427.326140194IPR017930Myb domain
SMARTSM007178.5E-15144192IPR001005SANT/Myb domain
PfamPF002491.4E-14145190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-27147194IPR009057Homeodomain-like
CDDcd001671.31E-10147190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MPPSSLWRSL VVVAAAAGEN PSHLWPPDPP RPINPSAFMA TAPPPPPLTP RSRRRRCRRH  60
RGRTESDRRR SAAAAAASMG RTPCCDSKGI KKGPWAPEED KLLVDFVQAN GPGNWRMLPK  120
LAGLNRCGKS CRLRWTNYLR PDIKRGPFTP EEHNSIVQLH AVVGNKWSMI AAQLPGRTDN  180
EIKNYWNTHL KKQLRQEALA GADAAAAQQL ALSAAAASPC PAARHMAQWE TARLEAEARL  240
SLLSSSAATT LTSAAAAAAS SSTAAEHAAP DIFLRLWNSE VGESFRGTAH GPAEAGAPAL  300
LPAPRGGDDS SAASTNGTEA ADDYHAFLEL AVEEFALLHG RLGGAFSEFT PVDVHVLAEA  360
SCLFTPFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27921947108B-MYB
1mse_C5e-27921944105C-Myb DNA-Binding Domain
1msf_C5e-27921944105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G179800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086211e-118AK108621.1 Oryza sativa Japonica Group cDNA clone:002-147-D04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669097.21e-143transcription factor MYB41
SwissprotQ9M2D93e-81MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A368RX340.0A0A368RX34_SETIT; Uncharacterized protein
STRINGPavir.Ga01101.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-66myb domain protein 17