PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G169600.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 718aa    MW: 76966 Da    PI: 7.4707
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G169600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.79.6e-23156257199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +s  +  +d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF  
  Seita.7G169600.2.p 156 FAKTLTQSDANNGGGFSVPRFCAETIfpeldyrARPPVQS--VYARDVHGVEWSFRHIYRGTPRRHLLTTGWSNFVNKKRLLAGDSVVFV- 243
                         89*********************999****9986666675..************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++ +++ +v+++r+
  Seita.7G169600.2.p 244 -REANGRIHVGLRRA 257
                         .4578889***9996 PP
2Auxin_resp113.91.5e-37306389183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+ +++Fevv++Prast+eF+v+++ v+++++v++++GmRfkmafetedss++++ +Gt++gv+++dp+rWp+S+Wr+L+
  Seita.7G169600.2.p 306 AARLAAAGQPFEVVHYPRASTPEFCVRAAAVRASMQVPWCPGMRFKMAFETEDSSRISWfMGTIAGVKAADPTRWPQSPWRLLQ 389
                         678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-29146258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-35148259IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-20155256No hitNo description
PfamPF023622.2E-20156257IPR003340B3 DNA binding domain
SMARTSM010197.2E-21156258IPR003340B3 DNA binding domain
PROSITE profilePS5086312.774156258IPR003340B3 DNA binding domain
PfamPF065072.4E-32306389IPR010525Auxin response factor
PROSITE profilePS5174516.36630708IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MSAAACAPTR LGMLTFAERM PPPPPPPPPQ PQPEQLEEEV MIDGGAAAEG GVSPQLWLAS  60
AGSMCTVPPV GAAVYYFPQG HAEQASAAVD LPAAAVPPFV PCRVAAVRFM AEPHTDEVYA  120
RIRLVPLRSG EPVVDVGDAA AAGGDQQPQQ PNQASFAKTL TQSDANNGGG FSVPRFCAET  180
IFPELDYRAR PPVQSVYARD VHGVEWSFRH IYRGTPRRHL LTTGWSNFVN KKRLLAGDSV  240
VFVREANGRI HVGLRRAKRG FGAGAGGDDG FAGWGDAFGA LQVRGNAGGG ARYPGGKVPP  300
EDVVAAARLA AAGQPFEVVH YPRASTPEFC VRAAAVRASM QVPWCPGMRF KMAFETEDSS  360
RISWFMGTIA GVKAADPTRW PQSPWRLLQV AWDEPELLQN VKRVCPWLVE QVSSMPNLHL  420
PSFTPRKKPR IPEFPLEGQP LFDPGFPPAA HPLPPLAPHP RPHHDQNPHP HALVPLFPFP  480
DGSAAAGIQG ARHAQFAPFF SDLHVGNLQQ GLLFCGFRPA DHHTTPPAPR ISTDLAIGIP  540
PPPRQDAPRS PPSAASKKAD DDVKPARIML FGRAILTEEQ MNCNSPTSPG ATGEGAPKPD  600
RDAEKGPNTP DGSGSGVTEG SPTKNNLWEP GQCKVFVKSD SVGRNLDLSA LGTFDELYAR  660
LAAMFRFDNA DLRSHVLYRT ATGEEKHVGD EPFSAFVKSV RRITIRSDAG SDSTGSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-763241030388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G169600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978138.40.0auxin response factor 10
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A368RWQ60.0A0A368RWQ6_SETIT; Auxin response factor
STRINGSi009541m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-170auxin response factor 16