PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G167600.1.p
Common NameSETIT_011709mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 346aa    MW: 37073.7 Da    PI: 6.1795
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G167600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13158204455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h + Er+RR++i +++ eL +++P +     +K +Ka+iL  Av+Y+k+Lq
  Seita.7G167600.1.p 158 DHTISERKRREKISQRLIELSTVIPGL-----TKTDKATILGDAVRYVKELQ 204
                         599***********************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10158204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15158215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-15158212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-14159208No hitNo description
SMARTSM003533.1E-14160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDDSGLFMQW ALSTLQEQQE PPPVPAADDS GSEVTIVSLL DQFGHPASPD CTVPGRPPVL  60
EARRWAATSW SAGDTNSGSD GGGNAPVPVP AMERDGLSPS LDSVKRATAA TQTGSVGSGT  120
SQPMSWDFSH SASPRLSNEV MPINYAAAAR SSAPYARDHT ISERKRREKI SQRLIELSTV  180
IPGLTKTDKA TILGDAVRYV KELQEKLRVL EDGSRKNGRS FSPVLAKKPR IATPNDEDAV  240
LPSYPPAASN AEIDARISGD NVTVRIHCKD AKGVLVKLLT EVEGLHLSII DTNVMPFLEC  300
TLIINIMAKV EEGFNSKPDD IVGSLKSVLH QHGTRNSTQE KRSSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167ERKRRE
2163168RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G167600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684464.10.0transcription factor bHLH18-like
TrEMBLK3YBW50.0K3YBW5_SETIT; Uncharacterized protein
STRINGSi011709m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-35bHLH family protein