PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G153500.1.p | ||||||||
Common Name | LOC101773315, SETIT_010592mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | CO-like | ||||||||
Protein Properties | Length: 327aa MW: 34393.4 Da PI: 4.9465 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.4 | 5.8e-08 | 20 | 56 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 r C+ ++ + ++l+C+ + +lC+ C H g H Seita.7G153500.1.p 20 RPCDACGGEAARLYCRADAAFLCAGCDARAH-GagsrH 56 68*************************9999.435667 PP | |||||||
2 | zf-B_box | 23.5 | 1.1e-07 | 59 | 103 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC++C +H+ H++ p Seita.7G153500.1.p 59 VWLCEVCEHAPAVVTCRADAAALCASCDADIHSAnplarrHERLP 103 679*****************************6688888898877 PP | |||||||
3 | CCT | 68.9 | 1.4e-23 | 238 | 281 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ Seita.7G153500.1.p 238 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 281 9****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.0E-8 | 17 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.424 | 17 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.4E-6 | 20 | 57 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.67E-9 | 20 | 61 | No hit | No description |
PROSITE profile | PS50119 | 10.395 | 57 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.9E-6 | 59 | 104 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.83E-9 | 60 | 104 | No hit | No description |
SMART | SM00336 | 2.2E-9 | 62 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 9.2E-18 | 238 | 280 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.876 | 238 | 280 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MEGDEKSAVG APAYWGLGAR PCDACGGEAA RLYCRADAAF LCAGCDARAH GAGSRHARVW 60 LCEVCEHAPA VVTCRADAAA LCASCDADIH SANPLARRHE RLPVAPFFGA LADAPKPFAS 120 SAAAVPKAAD DDGSNEAEAA SWLLPEPDLG PKEESATTEV FFADSDPYLD LDFARSMDDI 180 KAIGVQNGPA ELDLTGAKLF YSDHSMNHSV SSSEAAVVPD AAAGAAPVVP VVSRGLEREA 240 RLMRYREKRK SRRFEKTIRY ASRKAYAETR PRIKGRFAKR TAGAGADGED PLEEHEEEMY 300 SSAAAAVAAL MAPGGADGDY GVVPTY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G153500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727984 | 0.0 | KJ727984.1 Zea mays clone pUT6100 C2C2-CO-like transcription factor (COL7) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976103.1 | 0.0 | zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | K3Y8Q0 | 0.0 | K3Y8Q0_SETIT; Uncharacterized protein | ||||
STRING | Si010592m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-33 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G153500.1.p |
Entrez Gene | 101773315 |