PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.7G149800.1.p

Common Name

LOC101758592, SETIT_010884mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

DBB

Protein Properties

Length: 259aa MW: 27207.5 Da PI: 4.5544

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G149800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.3	1.3e-07	4	46	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e ++ C ++ lC+ C +e+H H++ p Seita.7G149800.1.p 4 QCDACEGAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 46 6****99*******************6678888898877 PP
2	zf-B_box	28.6	3e-09	56	87	3	34
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ ++ek++ +fC +++ l+C+dC + +H Seita.7G149800.1.p 56 LPRCDVCQEKPAFIFCVEDRALFCRDCDEPIH 87 689**************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.997	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	7.00E-7	3	47	No hit	No description
SMART	SM00336	2.1E-9	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.6E-5	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.56	54	101	IPR000315	B-box-type zinc finger
SMART	SM00336	3.0E-14	54	101	IPR000315	B-box-type zinc finger
CDD	cd00021	4.24E-8	57	87	No hit	No description
Pfam	PF00643	5.5E-7	57	97	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MRIQCDACEG AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLDGE GAAGDLPRCD 60 VCQEKPAFIF CVEDRALFCR DCDEPIHVPG TLSGNHQRYL ATGIRVGFSS VCGAGAGAGA 120 EGLPPPKGSS NSKPAATAGA AKTPPVVKDA QPQEVPSSPF LPPSGWAVED LLQLSDYESS 180 DKDSPLGFKE LEWFADIDLF HGHAPAKTTT AEVPELFASP QPATNAGFYK ATGARQSKKP 240 RVQLPDDEDD FFIVPDLG*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269\|PubMed:12909688, ECO:0000269\|PubMed:17605755, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:21685177, ECO:0000269\|PubMed:22410790, ECO:0000269\|PubMed:23624715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G149800.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269\|PubMed:17605755}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT841767	1e-136	CT841767.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103C07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976063.1	0.0	B-box zinc finger protein 24
Swissprot	Q96288	5e-69	BBX24_ARATH; B-box zinc finger protein 24
TrEMBL	K3Y9J2	0.0	K3Y9J2_SETIT; Uncharacterized protein
STRING	Si010884m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3202	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	2e-68	DBB family protein

Link Out ? help Back to Top
Phytozome	Seita.7G149800.1.p
Entrez Gene	101758592

Publications ? help Back to Top
Gangappa SN,Holm M,Botto JF Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development. Plant Signal Behav, 2014. [PMID:23733077] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Imtiaz M, et al. Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis. Plant Mol. Biol., 2015. 89(1-2): p. 1-19 [PMID:26253592] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209]