PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G145100.1.p
Common NameSETIT_010513mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 345aa    MW: 36788.6 Da    PI: 7.5473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G145100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.4e-12275320655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+ l+P+     +k  s a++L +Av++I+ Lq
  Seita.7G145100.1.p 275 SIAERERRTRISEKLRKLQALVPNM----DKQTSTADMLDLAVDHIRGLQ 320
                         689*********************7....688****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.475269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-16272337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.98E-13273324No hitNo description
Gene3DG3DSA:4.10.280.101.6E-14274333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9275320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-13275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDPPPPPPRA RLRYGSGGSA QQGGQQFPFV VDPTEAAGAA AVRAFFPAPD GGEPPPPSSG  60
DRAPGQERYG GHGEISLGHG QGVHHHRYHQ FGVEGKQLDG GPAAAPLPRH SSSPPGFFSS  120
PVVDNGFPSA RAGVGVGGDV HHATSSYHKK MKSPMNLAGQ GTLSHISEDG IPDLTNNVYG  180
SGHSEENITT NSVARSSNGF SIGTWEDSNS IVFSNPASNA GIHNNDDIIA SLSNYELQFG  240
ATKETSGMDK YLQMQQDQVP FRVRAKRGCA THPRSIAERE RRTRISEKLR KLQALVPNMD  300
KQTSTADMLD LAVDHIRGLQ SELQALKQDK EQCTCRGNHH PSGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G145100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680391e-79AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978091.20.0transcription factor bHLH128
TrEMBLK3Y8H10.0K3Y8H1_SETIT; Uncharacterized protein
STRINGSi010513m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141882026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-44bHLH family protein