PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G144200.1.p
Common NameSETIT_010147mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 383aa    MW: 41741.4 Da    PI: 6.8022
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G144200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.84.4e-2647115270
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                         W ++e+l+Li++rrem+ +++++k++k+lWe++s++mr++gf rsp++C++kw+nl k++kk + ++++
  Seita.7G144200.1.p  47 WVREETLCLIALRREMDAHFNTSKSNKHLWEAISSRMRDQGFDRSPTMCTDKWRNLLKEFKKARSHARS 115
                         ****************************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.44439103IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-441107IPR009057Homeodomain-like
SMARTSM007176.5E-643105IPR001005SANT/Myb domain
CDDcd122035.93E-2745110No hitNo description
PfamPF138373.2E-1846139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MLLSGPPAAP TPPLLLPESS GEDGGHDSSS RAAAAAGSVP KRRAETWVRE ETLCLIALRR  60
EMDAHFNTSK SNKHLWEAIS SRMRDQGFDR SPTMCTDKWR NLLKEFKKAR SHARSSGGGG  120
SGAGGNGNAK MAYYKEIDDL LKRRGKASGS GGGVGSGSGS GAGKSPTSNS KIESYLQFAT  180
DNGFEDASIP FGPVEANGRS LLSIDDRLED DRHPLPLTAA DAVATNGVNQ WNWRDTSTNG  240
GDNQGTFGGR VILVKWGDYT KRIGIDGTAE AIKEAIKSAF GLRTRRAFWL EDEDEVVRTL  300
DRDMPIRTYT LHLDDGVTIK LCDASRMQTP EDKTFYTEDD LRDFLARRGW TLLREYGGYR  360
NVDSLDDLRP GVIYQGLRSL GD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A4e-3941136186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G144200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976014.10.0trihelix transcription factor GT-1
SwissprotQ9FX531e-142TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A368RVI50.0A0A368RVI5_SETIT; Uncharacterized protein
STRINGSi010147m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-132Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]