PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G135900.1.p
Common NameLOC101781147, SETIT_009551mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 669aa    MW: 72777.6 Da    PI: 9.0677
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G135900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.2e-07570619147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r+++T +E   lv+av++ G+g+W+++  +     ++Rt  ++k++w ++
  Seita.7G135900.1.p 570 RMPFTVDEVAALVEAVELIGTGRWRAVKMHAFehvEHRTYVDLKDKWKTL 619
                         789************************999989999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.29E-7376451IPR029071Ubiquitin-related domain
PROSITE profilePS500538.873381445IPR000626Ubiquitin domain
PROSITE profilePS5129414.63565624IPR017930Myb domain
SMARTSM007177.9E-7569622IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-10570620IPR009057Homeodomain-like
SuperFamilySSF466893.89E-15572651IPR009057Homeodomain-like
CDDcd116604.57E-15572621No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MVMRKRSDSG SRGRRTATMP RVPNSARGKR TTRKKKDEMC AFDLLATVAG TLLADQDISN  60
NVPNTSGAAK AKNKKAVKEE HRDEILPLNN MAVEKDCCNG CVVGSGGICA FPRQANNCSA  120
ENSSTINEAG SMLESLTVKS NMLVRDSLVS CTRPYETSCG LGIIPEFGAR GTHHPGSSSS  180
AEAEQMHQAE PKVVRRQADG HAAVLHSLFD SVDLDVRPPA LVSSDSSSCV PLCNHDKDHQ  240
TASLCRDEVQ YTADRDDDEN SSGCTHPSTA GDKGSRPQYI GSHRIRKLLA SKVRKAARNK  300
ICGGMPSKKV CGGMSNKGSK LNLCSKKIPA RRQKVQRTIF KKKKPAHHAT SFAKEMLTGA  360
AGTSFSTEGR NKSSGSDNYH VKLRIKSFNI PEVFINVPEN ATIGSLKKTV MDVVNSIMQG  420
GLRVGVLLQG KDIQDDNKTL RQAGICHDKK LNNIDFTLEC EGGQDSPSGV VKPEQMDLLS  480
ADVVEPLARM KCEEHFPETV GDDNQQRTPP YRSRSLSDLY SVVHPVEMAS QDTSTSSQAI  540
VPVAPSDDGA LAIVPLCSVR RSETGQRRTR MPFTVDEVAA LVEAVELIGT GRWRAVKMHA  600
FEHVEHRTYV DLKDKWKTLV HTASISPQQR RGEPVPQELL DRVLAAQAYW SEHPKIRGKA  660
PLPAICSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2roh_A3e-475426513112Telomere binding protein-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330344RRQKVQRTIFKKKKP
Functional Description ? help Back to Top
Source Description
UniProtBinds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G135900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794540.0HF679454.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB48 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975948.10.0telomere-binding protein 1
SwissprotQ9LL450.0TBP1_ORYSJ; Telomere-binding protein 1
TrEMBLK3Y5R20.0K3Y5R2_SETIT; Uncharacterized protein
STRINGSi009551m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108241215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-60TRF-like 2
Publications ? help Back to Top
  1. Yu EY, et al.
    Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1.
    J. Biol. Chem., 2000. 275(31): p. 24208-14
    [PMID:10811811]
  2. Hong JP, et al.
    Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice.
    Plant Cell, 2007. 19(6): p. 1770-81
    [PMID:17586654]
  3. Ko S, et al.
    Solution structure of the DNA binding domain of rice telomere binding protein RTBP1.
    Biochemistry, 2009. 48(5): p. 827-38
    [PMID:19152316]
  4. Mukherjee K,Pandey DM,Vidyarthi AS
    In silico characterization and analysis of RTBP1 and NgTRF1 protein through MD simulation and molecular docking - A comparative study.
    Interdiscip Sci, 2015.
    [PMID:25663113]
  5. Mukherjee K,Pandey DM,Vidyarthi AS
    In Silico Characterization and Analysis of RTBP1 and NgTRF1 Protein Through MD Simulation and Molecular Docking: A Comparative Study.
    Interdiscip Sci, 2015. 7(3): p. 275-86
    [PMID:26289405]