PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G107800.2.p
Common NameSETIT_011972mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 310aa    MW: 33586.2 Da    PI: 5.9858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G107800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.24e-15143189455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Seita.7G107800.2.p 143 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYMKELQ 189
                         699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.961139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-18143198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-13143189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.11E-16144193No hitNo description
SuperFamilySSF474593.01E-17144201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-15145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd021160.00807253285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEDYSGLFLQ WAMDRPQQEH LAAAPVDGEC GEVATFPSLQ ALREASQAEE MVQELIGQPH  60
PANSWSPGDG YIIDGSSIGK NADPALSRST SWNFGAASAP PPGPRDGGMS GAAATRSLPE  120
LTCGPPPTRR AVLKSVGSMY AQDHIIAERK RREKINQRFI ELSTVIPGLK KMDKATILSD  180
ATRYMKELQE KIKALEDGSS DRSIESWVLV KNPCIAVPDE GSSQSWTSSG TPAMSRNPLP  240
EIEARFLEKS VMVRIHCEDG KGVAARVLTE VDELHLSIIH ANVTPFPAST LIITITAKPI  300
LMRYKNTLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152ERKRRE
2148153RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G107800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684457.10.0transcription factor bHLH25
TrEMBLA0A368RUG90.0A0A368RUG9_SETIT; Uncharacterized protein
STRINGSi011972m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-45bHLH family protein