PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G107800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 333aa    MW: 35818.4 Da    PI: 4.9144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G107800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.4e-15143189455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Seita.7G107800.1.p 143 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYMKELQ 189
                         699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.961139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-13143189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-18143198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-17144201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.79E-16144193No hitNo description
SMARTSM003533.0E-15145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.759252329IPR002912ACT domain
CDDcd021160.00895253285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEDYSGLFLQ WAMDRPQQEH LAAAPVDGEC GEVATFPSLQ ALREASQAEE MVQELIGQPH  60
PANSWSPGDG YIIDGSSIGK NADPALSRST SWNFGAASAP PPGPRDGGMS GAAATRSLPE  120
LTCGPPPTRR AVLKSVGSMY AQDHIIAERK RREKINQRFI ELSTVIPGLK KMDKATILSD  180
ATRYMKELQE KIKALEDGSS DRSIESWVLV KNPCIAVPDE GSSQSWTSSG TPAMSRNPLP  240
EIEARFLEKS VMVRIHCEDG KGVAARVLTE VDELHLSIIH ANVTPFPAST LIITITAKVE  300
EGFTVTADEI LGRLNSALLH SSSCNSPEET GN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152ERKRRE
2148153RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G107800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684457.10.0transcription factor bHLH25
TrEMBLA0A368RU880.0A0A368RU88_SETIT; Uncharacterized protein
STRINGSi011972m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-49bHLH family protein