PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G098400.1.p
Common NameSETIT_009419mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 680aa    MW: 70009 Da    PI: 6.3525
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G098400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11438484555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h   Er RR+++++ f++L  llP +     +K++K++i+ +Av YI+sL+
  Seita.7G098400.1.p 438 HIWTERERRKKMKNMFSTLHALLPRL----PEKVDKSTIVAEAVTYIRSLE 484
                         5557*********************6....39*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.64E-12432484No hitNo description
SuperFamilySSF474593.4E-13433497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.119433483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-13437494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9438484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-7441489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.88E-4601652No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MASETSNTGS KPASPALLHA GEDSNTESKI ASPVVFHAGE DNTGSKLSSP VVLHAGEENN  60
AGSKLASPAV LHDGEDNNAG SKLASSAVLH AGEDNNTESK LASPVVLHPG ENNRAEYKLA  120
IQAVPHAGED STPMSKLACP VVLYAGEGTN ADSKMDIPMP HVSVDSNTNA RFKHDSPAVL  180
YAELASQVVP HAGPTVLQAG EGNNIQAVPH AGEDNNAGSK LAMSAGLHVG ESNNASKFII  240
QAVTHAGEDN NAESRLSRLG EFQAGEGNNT ASKHAIQAVP IASDDNNSGS KIAIEAVPYA  300
GEDNNAGGSK IAMLAALHDG EDNNATSELT IQMVSNAGED NNAGSKLASP AAVNADDNNV  360
EKGKNNIVGE GGDNIAAGGG GGGAPSNTSK KLTSDGGGAY DAVKDASTAV ASRGRGRGRG  420
RGNGKGKGVA TEEEKGLHIW TERERRKKMK NMFSTLHALL PRLPEKVDKS TIVAEAVTYI  480
RSLEGTIKSL EKLKQDRIRA QQVAAGASCS RAAPPPPLPP PAPAAPTREA ILADMVQSWN  540
AQEAIMAELR AAASAVVSGV PRAVGSSSAA AAAPALAPAP ALQTWSGPNI VVCIAGSDAF  600
INLCTPRRPG MLTRLLHVLE RHRINVMAAT ISSDQTRSFF SIQARINEAT PPPPMLPGNL  660
RAEERYKLAV GEMLHAIAN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412421RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G098400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684253.10.0uncharacterized protein LOC111257954
TrEMBLA0A368RU380.0A0A368RU38_SETIT; Uncharacterized protein
STRINGSi009419m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-21bHLH family protein