PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G093800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | E2F/DP | ||||||||
Protein Properties | Length: 525aa MW: 56580 Da PI: 6.8503 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 81.1 | 9.3e-26 | 201 | 266 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL llt+kf++ll+++++gi++ln+ a++L +v ++RR YDi+NVLe+++liekk+kn+i+wkg Seita.7G093800.1.p 201 RYDSSLALLTRKFVSLLKQVQDGILDLNSTAEKL---HV--QKRRMYDITNVLEGIGLIEKKSKNRIHWKG 266 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.0E-27 | 199 | 268 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.27E-16 | 201 | 264 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 8.8E-32 | 201 | 266 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.7E-23 | 203 | 266 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 1.70E-40 | 278 | 382 | No hit | No description |
SuperFamily | SSF144074 | 6.28E-29 | 279 | 383 | No hit | No description |
Pfam | PF16421 | 1.8E-29 | 281 | 381 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MSGGARPAAS QQIVQSLQRC ALLPPVGPPF ADALGDYHRF PRPSSSPAAA AAAAAPLAGG 60 RGGIEEGIVL RAPVSRLSPV RPPFASAPGD YHRFPRPSSP AAAAAPLAGG RGGIEEGIVA 120 RTPLKRKAPY EGSGIAESLE LVMTSHGFNG GVGTPLGAPV SGKSARTYKS KAKCCKAEPQ 180 TPISNAAGSP GNPPTPAVPC RYDSSLALLT RKFVSLLKQV QDGILDLNST AEKLHVQKRR 240 MYDITNVLEG IGLIEKKSKN RIHWKGLDES GTNLDNALSV LKNEVENLNL QEQALDEHIS 300 EMRKKLETLT EDENRQRWLF LTEDDIKGLP CFQNQTLIAI KAPHGTSVEV PNPDLMAVES 360 FQRRYRIIIR SAMGPVDLYL VSNFEEKLEG KLDDIATLAS HTYFAKCAAS VKGPRTKRAQ 420 RNRKEAVLNA QQIHKTPDLN APCPSEGVLR KILPKDVDSD ADYWLLTDDD VSITDMWRTA 480 PEMEWDQIDP NDFLAEEVST PGPGTLNQQP DANGEPTADG PNHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 1e-24 | 196 | 267 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G093800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977980.1 | 0.0 | transcription factor E2FB isoform X2 | ||||
TrEMBL | A0A368RU11 | 0.0 | A0A368RU11_SETIT; Uncharacterized protein | ||||
STRING | Si009650m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 1e-108 | E2F transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G093800.1.p |