PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G087200.1.p
Common NameLOC101785306, SETIT_009787mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 520aa    MW: 55124.8 Da    PI: 7.2598
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G087200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.43.8e-18130219186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +Wt+  +  L++a++++ e+l+rg+l++ +We+v+ ++     ++   +s +qCk+k++nl+kryk + ++  + + +++s++p+f+++e
  Seita.7G087200.1.p 130 EWTDGAISSLLDAYTDRFEQLNRGNLRGRDWEDVAGAVtdgqGKTTGGKSVEQCKNKIDNLKKRYKVECQRLASSSGGAVSHWPWFKKME 219
                         5*************************************7655444446899**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-20128221No hitNo description
Gene3DG3DSA:3.40.1160.103.7E-70274512IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.36E-51277512IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.583277513IPR015963Uridylate kinase, bacteria
CDDcd042549.51E-102280513No hitNo description
PfamPF006965.4E-17280492IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MASCDDDFGL LGDDAHQPAA PPPQAPTTAQ QPAPPPQPAQ AFCFADAAVA PGAGAGAGSF  60
AQVPEESNHH AERGKAAHHA KRTRERADEF SSDGGEYCSY INSGGSGGGG KKGRGGGSSG  120
ASDYRKDREE WTDGAISSLL DAYTDRFEQL NRGNLRGRDW EDVAGAVTDG QGKTTGGKSV  180
EQCKNKIDNL KKRYKVECQR LASSSGGAVS HWPWFKKMEQ IVGNSASPAS SKPLATAEDE  240
KPSQQQQQQH GSKRYPLSSA GPITVVGSSR VNPLSNPRWK RVLLKIGGTA LAGPAPQNVD  300
PKIIMLIARE VQVACHHGVE VAIVVGGRNI FCGDNWVAAT GTDRASTYPI GMMASVMNSV  360
LLQASLEKIG VETRVQTALM IQEVAEPYVR RRAIRHLEKG RVVIFGGIGA GIGNPLFTTD  420
TAAALRASEI SADVVLKGIV GDEEYGCPPR SNNNAPFEHI SFREFAARGF SRMDMTAVTC  480
CEENNIPVVI FNMLEPGNIS RAICGDQIGT LVDQSGRIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-612725122239Uridylate kinase
3ek5_B2e-612725122239Uridylate kinase
3ek5_C2e-612725122239Uridylate kinase
3ek5_D2e-612725122239Uridylate kinase
3ek5_E2e-612725122239Uridylate kinase
3ek5_F2e-612725122239Uridylate kinase
3ek6_A2e-612725122239Uridylate kinase
3ek6_B2e-612725122239Uridylate kinase
3ek6_C2e-612725122239Uridylate kinase
3ek6_D2e-612725122239Uridylate kinase
3ek6_E2e-612725122239Uridylate kinase
3ek6_F2e-612725122239Uridylate kinase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116GGKKGRGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G087200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0675670.0BT067567.1 Zea mays full-length cDNA clone ZM_BFc0089D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975528.10.0uncharacterized protein LOC101785306 isoform X3
TrEMBLK3Y6K30.0K3Y6K3_SETIT; Uncharacterized protein
STRINGSi009787m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-159Trihelix family protein