PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G080300.3.p
Common NameLOC101757626, SETIT_010289mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 393aa    MW: 41263.6 Da    PI: 9.8292
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G080300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20173222255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Seita.7G080300.3.p 173 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 222
                         7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.4E-33172231IPR001471AP2/ERF domain
SMARTSM003804.8E-38173236IPR001471AP2/ERF domain
CDDcd000181.23E-30173231No hitNo description
PfamPF008471.9E-13173222IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-22173231IPR016177DNA-binding domain
PROSITE profilePS5103224.711173230IPR001471AP2/ERF domain
PRINTSPR003672.0E-11174185IPR001471AP2/ERF domain
PRINTSPR003672.0E-11196212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MPGSIDPAPS ADGRRRRRQI DRQLTKVDPR RHGKRPLPAD KEEEDQPPPP PPAKHEQLEI  60
EEHRYHVSQL QQGATFSAGG GGGGSSSSSA AGAAAGPSPE AYAQYYYSAR ADHDASAVAS  120
ALAHVIRASP DQLPPHAFGG GGAPPGQGDY QQAAPPAAAA AAAEEEQAGR RRHYRGVRQR  180
PWGKWAAEIR DPKKAARVWL GTFDTAEDAA IAYDEAALRF KGTKAKLNFP ERVQGRTDMG  240
FLVTRGIPDR HHHQGGAAVT LAAMPPPHRQ HHQTVVPYPD LMQYAQLLQG GGRGGGGAGD  300
HHAEAAAQQA QARLMMMARG GVSLPFGAAS FSSSSSSAPQ ILDFSTQQLI RPGPPSPAAA  360
APSTPSSTTT ASSPGGSAWP YGGEHHRNKK DA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-26172234467ATERF1
3gcc_A3e-26172234467ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290296GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G080300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570621e-147EU957062.1 Zea mays clone 1581709 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702790.10.0AT-rich interactive domain-containing protein 1A isoform X2
TrEMBLK3Y7V10.0K3Y7V1_SETIT; Uncharacterized protein
STRINGSi010289m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-22related to AP2 6l