PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G080300.1.p | ||||||||
Common Name | LOC101757626, SETIT_010289mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 394aa MW: 41334.7 Da PI: 9.8292 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 174 | 223 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa a+++a+++++g Seita.7G080300.1.p 174 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 223 7********.**********94....45***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.4E-33 | 173 | 232 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-13 | 174 | 223 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.24E-30 | 174 | 232 | No hit | No description |
SuperFamily | SSF54171 | 3.86E-22 | 174 | 232 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.711 | 174 | 231 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-38 | 174 | 237 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 175 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 197 | 213 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MPGSIDPAPS ADGRRRRRQI DRQLTKVDPR RHGKRPLPAD KEEEDQPPPP PPAKHEQLEI 60 EEHRYHVSQL QQGATFSAGG GGGGSSSSSA AGAAAGPSPE AYAQYYYSAR ADHDASAVAS 120 ALAHVIRASP DQLPPHAFGG GGAPPGQGDY QQAAPPAAAA AAAEEEQAAG RRRHYRGVRQ 180 RPWGKWAAEI RDPKKAARVW LGTFDTAEDA AIAYDEAALR FKGTKAKLNF PERVQGRTDM 240 GFLVTRGIPD RHHHQGGAAV TLAAMPPPHR QHHQTVVPYP DLMQYAQLLQ GGGRGGGGAG 300 DHHAEAAAQQ AQARLMMMAR GGVSLPFGAA SFSSSSSSAP QILDFSTQQL IRPGPPSPAA 360 AAPSTPSSTT TASSPGGSAW PYGGEHHRNK KDA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-26 | 173 | 235 | 4 | 67 | ATERF1 |
3gcc_A | 3e-26 | 173 | 235 | 4 | 67 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 291 | 297 | GGRGGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G080300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957062 | 1e-145 | EU957062.1 Zea mays clone 1581709 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702789.1 | 0.0 | AT-rich interactive domain-containing protein 1A isoform X1 | ||||
TrEMBL | K3Y7U8 | 0.0 | K3Y7U8_SETIT; Uncharacterized protein | ||||
STRING | Si010289m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4447 | 35 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 3e-22 | related to AP2 6l |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G080300.1.p |
Entrez Gene | 101757626 |