PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.7G079900.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 250aa MW: 26671.1 Da PI: 8.6336 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.8 | 4.6e-26 | 20 | 111 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rWt+qe+l+Lie++r +e++ r rg+ ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e+++ + + + + Seita.7G079900.3.p 20 RWTRQEILVLIEGKRVVERSGRgRGRgrarggggegAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERGGFAAR--KEA 108 8****************9999853334566777778********************************************983322..234 PP trihelix 81 yfd 83 f Seita.7G079900.3.p 109 SFW 111 444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.493 | 20 | 88 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-6 | 20 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.2E-11 | 20 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MSSAGEARGV GTGRGSRLPR WTRQEILVLI EGKRVVERSG RGRGRGRARG GGGEGAEPTK 60 WAAVAEYCRR HGVDRGPVQC RKRWSNLAGD YKKIREWERG GFAARKEASF WAMRNDARRE 120 RRLPGFFDRE VYDILEGRAP GNAAAAAVAR PVAVDVESKE DVAAALDGGA RGAEGAGLFS 180 SSEDEDDQED DAATPSPTPM ATPALAPAPV ALPISVSELS EIGLPAISFA LLCCLVNPLL 240 LLLRSYSNV* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 40 | 49 | RGRGRGRARG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.7G079900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU949356 | 1e-136 | EU949356.1 Zea mays clone 402974 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975457.1 | 1e-151 | trihelix transcription factor ASR3 isoform X1 | ||||
Refseq | XP_004975458.1 | 1e-151 | trihelix transcription factor ASR3 isoform X2 | ||||
Swissprot | Q8VZ20 | 6e-51 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A368RT71 | 1e-175 | A0A368RT71_SETIT; Uncharacterized protein | ||||
STRING | Si010590m | 1e-151 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33550.1 | 2e-41 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.7G079900.3.p |
Publications ? help Back to Top | |||
---|---|---|---|
|