PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G079900.2.p | ||||||||
Common Name | LOC101755612, SETIT_010590mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 327aa MW: 35312.2 Da PI: 9.2012 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82 | 8e-26 | 20 | 111 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rWt+qe+l+Lie++r +e++ r rg+ ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e+++ + + + + Seita.7G079900.2.p 20 RWTRQEILVLIEGKRVVERSGRgRGRgrarggggegAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERGGFAAR--KEA 108 8****************9999853334566777778********************************************983322..234 PP trihelix 81 yfd 83 f Seita.7G079900.2.p 109 SFW 111 444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.493 | 20 | 88 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.0E-11 | 20 | 101 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 20 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MSSAGEARGV GTGRGSRLPR WTRQEILVLI EGKRVVERSG RGRGRGRARG GGGEGAEPTK 60 WAAVAEYCRR HGVDRGPVQC RKRWSNLAGD YKKIREWERG GFAARKEASF WAMRNDARRE 120 RRLPGFFDRE VYDILEGRAP GNAAAAAVAR PVAVDVESKE DVAAALDGGA RGAEGAGLFS 180 SSEDEDDQED DAATPSPTPM ATPALAPAPV ALPISEKTTD ASRQESSEQG TSKRKQLEQI 240 TEDSPAQCGQ KRQRSDDNAS GRATTTDLQG RLVEILDRSS QMVAAQLEAQ NINSRLDREQ 300 RKDQVSSLLG VLGKVADALF RIADKL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 49 | RGRGRGRARG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G079900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU949356 | 1e-136 | EU949356.1 Zea mays clone 402974 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975458.1 | 0.0 | trihelix transcription factor ASR3 isoform X2 | ||||
TrEMBL | A0A368RT09 | 0.0 | A0A368RT09_SETIT; Uncharacterized protein | ||||
STRING | Si010590m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-41 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G079900.2.p |
Entrez Gene | 101755612 |