PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G079900.1.p
Common NameLOC101755612, SETIT_010590mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 328aa    MW: 35383.3 Da    PI: 9.2012
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G079900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix828.1e-2620111183
            trihelix   1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                         rWt+qe+l+Lie++r +e++ r rg+          ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e+++ + +  + +
  Seita.7G079900.1.p  20 RWTRQEILVLIEGKRVVERSGRgRGRgrarggggegAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERGGFAAR--KEA 108
                         8****************9999853334566777778********************************************983322..234 PP

            trihelix  81 yfd 83 
                          f 
  Seita.7G079900.1.p 109 SFW 111
                         444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.4932088IPR017877Myb-like domain
PfamPF138372.0E-1120101No hitNo description
Gene3DG3DSA:1.10.10.601.3E-52087IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSSAGEARGV GTGRGSRLPR WTRQEILVLI EGKRVVERSG RGRGRGRARG GGGEGAEPTK  60
WAAVAEYCRR HGVDRGPVQC RKRWSNLAGD YKKIREWERG GFAARKEASF WAMRNDARRE  120
RRLPGFFDRE VYDILEGRAP GNAAAAAVAR PVAVDVESKE DVAAALDGGA RGAEGAGLFS  180
SSEDEDDQED DAATPSPTPM ATPALAPAPV ALPISEKTTD ASRQESSEQA GTSKRKQLEQ  240
ITEDSPAQCG QKRQRSDDNA SGRATTTDLQ GRLVEILDRS SQMVAAQLEA QNINSRLDRE  300
QRKDQVSSLL GVLGKVADAL FRIADKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14049RGRGRGRARG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G079900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493561e-136EU949356.1 Zea mays clone 402974 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975457.10.0trihelix transcription factor ASR3 isoform X1
TrEMBLK3Y8P80.0K3Y8P8_SETIT; Uncharacterized protein
STRINGSi010590m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-59Trihelix family protein