PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G074500.1.p
Common NameLOC101769543, SETIT_009249mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CAMTA
Protein Properties Length: 1012aa    MW: 113187 Da    PI: 6.336
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G074500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.57e-55121273117
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e ++rwlk++e++ iL+n+e++ +t+e++++p sgsl+Lynr++ ryfr+DG++w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np
  Seita.7G074500.1.p  12 EEaRSRWLKPSEVYYILQNHERFPITHEAPKKPLSGSLFLYNRRVNRYFRRDGHTWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNP 102
                         5569*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylev 117
                          fqrrc+w+Le ++e+ivlv+y+ev
  Seita.7G074500.1.p 103 CFQRRCFWMLEPAYEHIVLVQYREV 127
                         ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.8167133IPR005559CG-1 DNA-binding domain
SMARTSM010768.9E-6910128IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-4613126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:1.25.40.204.4E-16392427IPR020683Ankyrin repeat-containing domain
SuperFamilySSF812962.97E-15434517IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.103.1E-8435526IPR013783Immunoglobulin-like fold
PfamPF018333.6E-7435509IPR002909IPT domain
SuperFamilySSF484035.13E-16462510IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.4E-16626726IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.13E-16630727IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.751632724IPR020683Ankyrin repeat-containing domain
CDDcd002042.61E-9637724No hitNo description
PfamPF127962.2E-6648725IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.301665697IPR002110Ankyrin repeat
SMARTSM002489.7E-5665694IPR002110Ankyrin repeat
SMARTSM0001527785807IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.602786815IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.712844873IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.25E-6844891IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001517845865IPR000048IQ motif, EF-hand binding site
PfamPF006120.015846864IPR000048IQ motif, EF-hand binding site
SMARTSM000153.7E-6866888IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.731867895IPR000048IQ motif, EF-hand binding site
PfamPF006122.6E-5868888IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1012 aa     Download sequence    Send to blast
MSQSFDINVL REEARSRWLK PSEVYYILQN HERFPITHEA PKKPLSGSLF LYNRRVNRYF  60
RRDGHTWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVAEG RYYSSQLSNG PPESFSSLGY PSAIYGNQYL SSTSGTSEGS ESHQSYSNLS  180
SVTEVSSYSG NKEYNKDGGS LLSIPELGQT CLEQTTEVYR DDNDNSKNKS GLNVALKKIA  240
EQLSLGDDND DDYIYSNKAQ SLGFATNIEA AGDDQLKQIQ PEGTQKGLGR NIAPSWEDVL  300
HSSSGLPTPS IYQSDVQYQQ NSEYHPPGSL DSSDLRIQLS AAKRFLLGPE ASIDSPSSNF  360
MLRNKGNSGT DTLSAHDSRL ESSLNPDWRT KAPLMFQSDS QGSEITELLF DHGQFEPYSR  420
ADTRLTLGLT KQFNIREISP EWAFSYEITK VIITGEFLCD PSNLCWAVMF GDSEVPVEIV  480
QPGVLRCHTP LHSSGKLRVC ITSGNREVCS DFKEFEFRSK PTSSTFSDLT PSSRPLKSSE  540
ELLFLAKFSR MLLSENGSSE IPDGDPQSAQ FPKLRTNEEL WDRLIGELKL GCETPLSMVD  600
QIMEELLKSR LQQWLSVKLK GLNGTASSLS KHEQGIIHLI SALGYEWALS SVLSAGVGLN  660
FRDSNGWTAL HWAAYFGREK MVAALLAAGA SATAVTDPSA QDPVGKTAAF LASERGHTGL  720
AGYLSEVLLT SYLASLTIEE SDVSKGSAEV EAERAVESIS QRSAQLHGGT EDELSMKDSL  780
AAVRNAAQAA ARIQNAFRAF SFRKRQQKTA RLRDEYGMTQ EDIDELAAAS RLYHQAHASS  840
GQFYDKAAVS IQKKYKGWKG RKHFLNMRRN AVKIQAHVRG HQVRKKYRTI VSTVSVLEKV  900
ILRWRRKGHG LRGFRAEQQP MVGAVEDDDE EDDDFYDDEA VKVFRRQKVD QAVKEAVSRV  960
LSMVDSTEAR MQYRRMLEEF RHATAELGGS HEVTSIFDSD LELLGINNFM L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G074500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975407.10.0calmodulin-binding transcription activator 4 isoform X1
TrEMBLK3Y4W10.0K3Y4W1_SETIT; Uncharacterized protein
STRINGSi009249m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-149Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains