PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G070000.1.p
Common NameLOC101759395, SETIT_010468mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 353aa    MW: 37491 Da    PI: 6.3795
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G070000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10146189755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           Er+RR r+++++ eLr+l+P+      +K++Ka+i   Av Y+k+Lq
  Seita.7G070000.1.p 146 VSERKRRVRMKEKLYELRSLVPNI-----TKMDKASIIADAVVYVKNLQ 189
                         57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-15136206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.70E-13136190No hitNo description
Gene3DG3DSA:4.10.280.103.3E-15136205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-8146189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDMEHQLLLF SPQEHFMASP PGFFAVGAGY SAHFQTGEFV EPVGVVATGI EDGAWVEDLM  60
QLGDELFGGG DVAAVAGTGD HEPWWYEDDG GGGSGSTDGP PASVSPGGYG SPPPSGEQGA  120
EPHREDGGDD ASPVTRKRRD RSKTMVSERK RRVRMKEKLY ELRSLVPNIT KMDKASIIAD  180
AVVYVKNLQA HARKLREEVA ALEVRPRSPS PAGPGHEQHG GRTAAAAAAG RRHHRPAAAG  240
HGARLSHVGV VQVGDGRFFV TVECERRDGV AAPLCAAAES LACFRVESSS LARSGPDRVV  300
STLTLKLSER VGDTIIGENS VKLWVMAALL KEGFRPEPTV EISSRSTCQP IN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136151KRRDRSKTMVSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G070000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8350403e-74CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975381.10.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLK3Y8C70.0K3Y8C7_SETIT; Uncharacterized protein
STRINGSi010468m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.17e-35FER-like regulator of iron uptake