PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G069900.1.p
Common NameSETIT_010533mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 341aa    MW: 36467.7 Da    PI: 5.8326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G069900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-10138182655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            Er+RR r+++++ eLr+l+P+      +K++Ka+i   Av Y+k+Lq
  Seita.7G069900.1.p 138 IVSERKRRVRMKEKLYELRSLVPNI-----TKMDKASIIADAVVYVKNLQ 182
                         568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.16E-13129183No hitNo description
SuperFamilySSF474591.7E-15129199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.383132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-16134198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7138182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEHELLQMLH LPPHELGQDH LTVSAAFFDV HGDAHFPGSG GGFAGAVADD DCSWVEDLMQ  60
LGDELFGGAG AGCDDNNAAG MDEGNRHPWQ WNGGDGSPPS VEQGAGELAS EPHRDDDGGD  120
GDGASPVTRK RRDRSKTIVS ERKRRVRMKE KLYELRSLVP NITKMDKASI IADAVVYVKN  180
LQAHARKLKE EVSALEARPR SPRQGQQQQR NRRAAAAAAA AGRRRQERDE DNGTAASGAR  240
VTHVGAAQVG EGRFFVTVEC ERRDGVAAPL CAAVESLACF RVETSSLVRS GTDRVVSTLT  300
LKVNEQVGDA AVCEGSVVKL LVMAALLKEG FRPEAAVEIS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129144KRRDRSKTIVSERKRR
2202212RQGQQQQRNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G069900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8350405e-88CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977937.30.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLK3Y8J10.0K3Y8J1_SETIT; Uncharacterized protein
STRINGSi010533m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-32FER-like regulator of iron uptake