PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G061100.1.p
Common NameSETIT_012707mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 733aa    MW: 80771.3 Da    PI: 6.2062
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G061100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.63.4e-2167122156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +r + +ft++q+e+Le+lF+ + +p+  +r+eLA+k+gL+ rqVk+WFqNrR+k k
  Seita.7G061100.1.p  67 KRGKNRFTAKQIEQLESLFQLSAHPDDPTRQELADKIGLEARQVKFWFQNRRTKTK 122
                         678899************************************************98 PP
2START119.44.9e-382264512205
                         HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
               START   2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                         +ae+a++e++ +a  +ep+W      +++ ++e+  +  ++        + +ea + ++ v +++ +lv+ l d++ +W+++++    ++ 
  Seita.7G061100.1.p 226 YAERALNEFMMLAVKDEPMWLPTIngKMLHNQEYNCRTCPGLLgpcpqgFVMEATKQTTTVRGTASDLVAMLTDVS-CWSKMFPgiieSVR 315
                         6899*****************99988666666665555554447888889**************************.***********999 PP

                         EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.....-TTSEE-EESSEEEEEEEECTC CS
               START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe....sssvvRaellpSgiliepksng 160
                           +v+ssg      g +q m+ +l + sp +p R + f+Ry+++ +  +w++vdvS+d  +  +     + +++ ++llpSg+l++++sng
  Seita.7G061100.1.p 316 ASKVVSSGistsrdGLIQEMNVDLWVQSPRAPnRSVKFLRYSKEIENNQWAVVDVSIDGIRGIEPnngsQIGYMSCRLLPSGCLLQDMSNG 406
                         9999*****************************************************96543222224599******************** PP

                         EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                          +kvtw+ h+++++ +++ l+r l +sg+a ga++w+a lqrqce
  Seita.7G061100.1.p 407 LCKVTWIVHAEYDETTVSPLFRGLFQSGQALGASRWLASLQRQCE 451
                         ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-2144124IPR009057Homeodomain-like
SuperFamilySSF466899.61E-1955123IPR009057Homeodomain-like
PROSITE profilePS5007118.80364124IPR001356Homeobox domain
SMARTSM003895.1E-1966128IPR001356Homeobox domain
CDDcd000865.11E-1767122No hitNo description
PfamPF000461.1E-1867122IPR001356Homeobox domain
PRINTSPR000316.9E-595104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000316.9E-5104120IPR000047Helix-turn-helix motif
PROSITE profilePS5084833.229216455IPR002913START domain
CDDcd088752.93E-79220451No hitNo description
SuperFamilySSF559612.11E-20223451No hitNo description
SMARTSM002343.6E-20225452IPR002913START domain
PfamPF018521.8E-31226451IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MDNEWQLNSN NEQGMGLNPG NETAYPNWIN HMEEYDIDAL LGAEDHVNTD QDEDDEEHHH  60
DGSKSSKRGK NRFTAKQIEQ LESLFQLSAH PDDPTRQELA DKIGLEARQV KFWFQNRRTK  120
TKAKAVGDQN KDIKQENAQL HAENMKLQQT LACGRCRDPT EHKWHLLNEN ARLKDTKRRA  180
QEYLIKLIHD SNLPHSETLE HLESASLNLV PFDDNGSTYQ ATLLSYAERA LNEFMMLAVK  240
DEPMWLPTIN GKMLHNQEYN CRTCPGLLGP CPQGFVMEAT KQTTTVRGTA SDLVAMLTDV  300
SCWSKMFPGI IESVRASKVV SSGISTSRDG LIQEMNVDLW VQSPRAPNRS VKFLRYSKEI  360
ENNQWAVVDV SIDGIRGIEP NNGSQIGYMS CRLLPSGCLL QDMSNGLCKV TWIVHAEYDE  420
TTVSPLFRGL FQSGQALGAS RWLASLQRQC EYMATLHCTH SSGPAMSALG RRGVLDLAQR  480
MMVSFYTAVS KPVTPGPSNI VNEWHGSCDI GAKTFLATVR MVIWNISTMG QPPALVLCAT  540
TTVWLPGVPP HRVHEYLCNG QRRGEWDKFG YGGAVQELSS IVTCRQLRGN VVSVLQPSDV  600
TVRANSNMLI LQEATSDLSC SLVVYSFVEK NMMCAVMDGA DNSAVFLLPS GFAILPDGHA  660
KAHRAAAASS SYSTPTGQNS TAGSLLTAAY QQILPNSIST HALETLDDAG SRVCQAISQI  720
LAAVGADIAI PA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178LKDTKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G061100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684239.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLA0A368RUC50.0A0A368RUC5_SETIT; Uncharacterized protein
STRINGSi012707m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-119protodermal factor 2