PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G058600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 443aa    MW: 44529.4 Da    PI: 7.4418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G058600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.7e-10258305455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Seita.7G058600.1.p 258 SHSLAERVRRERISERMKMLQSLVPGC----NKITGKALMLDEIINYVQSLQ 305
                         8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-17252322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-11252309No hitNo description
Gene3DG3DSA:4.10.280.107.0E-17254322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.694254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-7258305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-10260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MADEHFFPGP GDFPADLGAA PFYGSASYTP PGLDAAAAAM QGFGLAWADL QLPDSSGAAA  60
HFDSALSSLV SSPSHNAGGC YGAGGDDVAI IGDLIGRLGG ICGAAAAASA SNSCYSTPLS  120
SPPRGGAASP AAAAAASLAF RGGCCGYPGG AAALETAGTG RLSRVASSKS FGAPALGSPD  180
AAPPAKKRKA SGKGKATSSA MTPAAAANAS SKRSKVAAGG GAEGKDDDGG DNAAAAPEPE  240
PAKGYIHVRA RRGQATDSHS LAERVRRERI SERMKMLQSL VPGCNKITGK ALMLDEIINY  300
VQSLQRQVEF LSMKLSTMNP ELDLDARYQT AVLAPPHHHP AAAFPSYAAA AADPSFVTAA  360
HPPAQQQQQL VDSCAGSFRP GSGWEAQDLQ SVVARHNHSA AAAVHVPGSG WAAHESNSHG  420
AGRHQQQQQG AAAASHMKLE QP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G058600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977901.20.0transcription factor bHLH78
TrEMBLA0A368RST00.0A0A368RST0_SETIT; Uncharacterized protein
STRINGSi011841m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-43bHLH family protein