PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G057500.1.p
Common NameLOC101774923, SETIT_009268mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 978aa    MW: 110077 Da    PI: 4.91
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G057500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.8e-14853248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Seita.7G057500.1.p  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                        78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1060103248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Seita.7G057500.1.p  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                         68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139214.5E-131070No hitNo description
CDDcd001675.97E-121053No hitNo description
SuperFamilySSF466896.47E-2133108IPR009057Homeodomain-like
CDDcd116591.61E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.4E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118314.2E-59406658IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 978 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIAFEKRPP PGFYDTVGED KPPEHVQFPT  240
TIEELEGKRR VDIEAQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT KRSKLMLPPP  300
QISDHELEEI AKMGSAGDPA LAEELGEGST ATRALLSSYS QTPRLGMTPL RTPQRTPAGK  360
GDAIMMEAEN LARLRESQTP LLGGDNPDLH PSDFSGVTPR KKEIQTPNPM ATPLALASPG  420
PGATPRIGMT PSRDGNSFGL TPKATPFRDE LRINEEVELQ DSAKLELRRQ AELRKSLRSG  480
FASIPQPKNE YQIVMPPITE DEKEEAEERI EEDMSDRLAR ERAEEQARQE ALLRKRSKVL  540
QRSLPRPPAA SVEVLRQSLI KGGESRSRST FVPPTSLEQA DDLIHEELLR LLEHDNAKYP  600
LDDKTQKEKK KGNKRQANAA AVPEIEDFDE YELKEASSLV EEEIQYLRVA MGHESESFDD  660
FVKAHDACQE DLMYFPANNS YGLASVAGNA DKISALQNEF EIVKKRMDDE AKKASRLEQK  720
IKLLTQGYQV RAGKLWSQVQ DTFKQMDTAA TELECFQELQ KQEQLAASYR VRNLTEEVDK  780
QKALERTLQS RYGDLVSIYH RMQEQLEEHK IQLRKQEAIE AENRAREEAA AQNRADEEEN  840
ERRRNVEEGK EQTNSVPDEV PAGSKQINED QMDVDSSNVD GEFVGPIPPA PDTQGDSTEA  900
SVQENSFNVQ SGDDVTTNGE ACDMVDASKL ESQDNSNGSL PVDAVNQEDN KSNLPLVGAS  960
EGNTALSSDG DDAVTNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027963792Cell division cycle 5-like protein
5xjc_L0.027963792Cell division cycle 5-like protein
5yzg_L0.027963792Cell division cycle 5-like protein
5z56_L0.027963792Cell division cycle 5-like protein
5z57_L0.027963792Cell division cycle 5-like protein
5z58_L0.027963792Cell division cycle 5-like protein
6ff4_L0.027963792Cell division cycle 5-like protein
6ff7_L0.027963792Cell division cycle 5-like protein
6icz_L0.027963792Cell division cycle 5-like protein
6id0_L0.027963792Cell division cycle 5-like protein
6id1_L0.027963792Cell division cycle 5-like protein
6qdv_O0.027963792Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDTRQRKRKRK
2199204RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G057500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975336.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLK3Y4Y00.0K3Y4Y0_SETIT; Uncharacterized protein
STRINGSi009268m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44163553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]