PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G045300.2.p | ||||||||
Common Name | SETIT_010413mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 278aa MW: 30498.6 Da PI: 4.588 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.2 | 2.9e-13 | 76 | 121 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++Er RR+++N+++ Lr+++P+ +K++Ka+i + A+eYI +Lq Seita.7G045300.2.p 76 NIIMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIEQLQ 121 5689*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.929 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-17 | 75 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.46E-13 | 75 | 125 | No hit | No description |
Pfam | PF00010 | 6.0E-11 | 76 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-17 | 77 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-15 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00935 | 198 | 264 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MEMGDSFEYY WEMQRLIESE ELSMYLGAQD DALSCYDSSS PDGSMSNSSW APAVTVTAAD 60 DDKAAGGAGA AGANKNIIME RDRRRKLNEK LYALRSVVPN ITKMDKASII KDAIEYIEQL 120 QAEERRMLQE VRALEPAGGS DEERYEYDEG LLLQAERTKK MRRARSVPSI AADGAAPPPP 180 APVEVLELRV SEVGERVLVV SVTCGKGRDA MARVCRAVEE LRLRVITASI TSVAGCLMHT 240 IFVEVDQGDR IEMKHRIEAA LTQLDTTTGS PPSVMSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G045300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969784 | 1e-108 | EU969784.1 Zea mays clone 335640 DNA binding like mRNA, complete cds. | |||
GenBank | KJ727967 | 1e-108 | KJ727967.1 Zea mays clone pUT6080 bHLH transcription factor (bHLH116) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975236.1 | 0.0 | transcription factor bHLH35 | ||||
TrEMBL | A0A368RS58 | 0.0 | A0A368RS58_SETIT; Uncharacterized protein | ||||
STRING | Si010413m | 1e-147 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 2e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G045300.2.p |