PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G045300.1.p
Common NameSETIT_010413mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 279aa    MW: 30585.7 Da    PI: 4.588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G045300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-1377122555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + ++Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI +Lq
  Seita.7G045300.1.p  77 NIIMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIEQLQ 122
                         5689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.92972121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1776136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.44E-1376126No hitNo description
PfamPF000106.0E-1177122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1578127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1778136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00922199265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEMGDSFEYY WEMQRLIESE ELSSMYLGAQ DDALSCYDSS SPDGSMSNSS WAPAVTVTAA  60
DDDKAAGGAG AAGANKNIIM ERDRRRKLNE KLYALRSVVP NITKMDKASI IKDAIEYIEQ  120
LQAEERRMLQ EVRALEPAGG SDEERYEYDE GLLLQAERTK KMRRARSVPS IAADGAAPPP  180
PAPVEVLELR VSEVGERVLV VSVTCGKGRD AMARVCRAVE ELRLRVITAS ITSVAGCLMH  240
TIFVEVDQGD RIEMKHRIEA ALTQLDTTTG SPPSVMSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G045300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697841e-105EU969784.1 Zea mays clone 335640 DNA binding like mRNA, complete cds.
GenBankKJ7279671e-105KJ727967.1 Zea mays clone pUT6080 bHLH transcription factor (bHLH116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975236.11e-176transcription factor bHLH35
TrEMBLA0A368RRU90.0A0A368RRU9_SETIT; Uncharacterized protein
TrEMBLK3Y8D30.0K3Y8D3_SETIT; Uncharacterized protein
STRINGSi010413m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-51bHLH family protein