PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G045100.1.p | ||||||||
Common Name | LOC101766425, SETIT_010736mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 294aa MW: 31761.7 Da PI: 5.2575 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.4 | 1.3e-13 | 89 | 132 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+r+N+++ Lr+++P+ +K++Ka+i++ A+ YI++Lq Seita.7G045100.1.p 89 VMERHRRRRLNEKLYALRSVVPNI-----TKMDKASIVRDAIAYIQQLQ 132 58*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.751 | 82 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-17 | 86 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-16 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-16 | 89 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.31E-14 | 89 | 136 | No hit | No description |
Pfam | PF00010 | 2.7E-11 | 90 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.0E-4 | 223 | 281 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MEAADLLTLG FDFCFQSPPR FFDEPYEHDL AVVDSIVLHA PAEAESVTGL YPSNNREASS 60 SSDGANSSCN TQVPPASSPA GGLANKSMVM ERHRRRRLNE KLYALRSVVP NITKMDKASI 120 VRDAIAYIQQ LQEEERRVLA EVSALESSSD TAATVKTEDH AAAGDADSYP RRTKRTRTAA 180 ADGGSVTLSV DDASPPVQIL EVVVSEAGEK MAVVSVRCSR GRDAVAKVCR ALEPLRLRVV 240 TASIAAAGDA FVHTMFVEIE EMSGAQLKET VEAALAHLDV TRHSLKTKRY WED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G045100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961023 | 3e-49 | EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975233.1 | 0.0 | transcription factor bHLH35 | ||||
TrEMBL | K3Y944 | 0.0 | K3Y944_SETIT; Uncharacterized protein | ||||
STRING | Si010736m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1044 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 4e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G045100.1.p |
Entrez Gene | 101766425 |