PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G044900.2.p
Common NameLOC101765739, SETIT_010685mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 306aa    MW: 32270.7 Da    PI: 4.9392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G044900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-1390135555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + ++Er RR+r+N+++  Lr+++P+      +K++Ka+i + A+ Y+ +Lq
  Seita.7G044900.2.p  90 NTAMERGRRRRLNEKLYALRSVVPNI-----TKMDKASIIRDAIAYVEHLQ 135
                         689**********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.19985134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-1685151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.99E-1588139No hitNo description
PfamPF000109.8E-1190135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1591152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1691140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEGESSMVAM GFGLYWQSPP RFLLEPLDLA GAAVDDSMYA YVPPYDEAES LSGLCSSYAP  60
GHSSSPDGGA DSCSTPAAVA PPPPAVATRN TAMERGRRRR LNEKLYALRS VVPNITKMDK  120
ASIIRDAIAY VEHLQEQERR VLADISALRQ SSATATATVK TEGAPATEDA GRSFLPRKKM  180
RRALAIACAN DATRSITTSS PPVQILEVEV SEAGERVAVV SIRSSRGRDA VSQVCRALEP  240
LGLGVLTASI TAAGDTVVHT MFVETGEMGG ALLKEAILAA LAQLDVTIGP LKSMSCWELD  300
AAMES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G044900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9610232e-47EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975231.10.0transcription factor bHLH35 isoform X2
TrEMBLK3Y8Z30.0K3Y8Z3_SETIT; Uncharacterized protein
STRINGSi010685m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.24e-38bHLH family protein