PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G044900.1.p
Common NameLOC101765739, SETIT_010685mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 307aa    MW: 32357.8 Da    PI: 4.9392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G044900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-1391136555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + ++Er RR+r+N+++  Lr+++P+      +K++Ka+i + A+ Y+ +Lq
  Seita.7G044900.1.p  91 NTAMERGRRRRLNEKLYALRSVVPNI-----TKMDKASIIRDAIAYVEHLQ 136
                         689**********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.19986135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1686152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.87E-1589140No hitNo description
PfamPF000109.9E-1191136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1692141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1592153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEGESSMVAM GFGLYWQSPP RFLLEPLDLA GAAVDDSSMY AYVPPYDEAE SLSGLCSSYA  60
PGHSSSPDGG ADSCSTPAAV APPPPAVATR NTAMERGRRR RLNEKLYALR SVVPNITKMD  120
KASIIRDAIA YVEHLQEQER RVLADISALR QSSATATATV KTEGAPATED AGRSFLPRKK  180
MRRALAIACA NDATRSITTS SPPVQILEVE VSEAGERVAV VSIRSSRGRD AVSQVCRALE  240
PLGLGVLTAS ITAAGDTVVH TMFVETGEMG GALLKEAILA ALAQLDVTIG PLKSMSCWEL  300
DAAMES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G044900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9610232e-47EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975230.10.0transcription factor bHLH35 isoform X1
TrEMBLA0A368RTS90.0A0A368RTS9_SETIT; Uncharacterized protein
STRINGSi010685m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-37bHLH family protein