PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G033900.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 699aa MW: 80632.1 Da PI: 6.1962 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.7 | 8.1e-18 | 133 | 213 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f n Y+ +GF v+k ++k+ +k tfvC+k+ k + +++ +k+rr++a ++tgC+ k+ vk+ +g+we++++++eHnH+l+ Seita.7G033900.4.p 133 FLNVYGLLTGFVVKKGCNYKH------KKITFVCNKSSKMKVTETG-QKKRRSNAIEKTGCRMKVLVKLV-EGRWEIKTVVNEHNHPLM 213 8899***************99......5678***********9999.9**********************.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.9E-15 | 133 | 213 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.1E-24 | 337 | 432 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.569 | 623 | 659 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0017 | 634 | 661 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MDVRVIEINK KRAMEGMCAR SVLVLPIPDQ AMTGQVQVRE AQRTAEKESD VAMVAEEGPE 60 AAVTSAQDPE QDGGDHVSND EENDDFKGCQ KDRTEAEVDG DEDYFFPSVE DVEKARPPEV 120 GMVFPTLQDA HRFLNVYGLL TGFVVKKGCN YKHKKITFVC NKSSKMKVTE TGQKKRRSNA 180 IEKTGCRMKV LVKLVEGRWE IKTVVNEHNH PLMSSPSLST FFISHKYMSE EERIFSRILQ 240 ESKIKPSQIM EIFKKLRSRL KHIPVRKMDA NSLKQSDSQM EIRNTDIEIT LEHVRRFQME 300 QPGFFYAIKT DDRNTVRSIF WTDARARLDY ALYGDFISFD TSYTTREHNM LFAPLIGING 360 HGKAIVFGWG LLENEMADKA DTFSWLLRTF LDVMDGKKPT TIITDQGSAM TKSIAEVFPT 420 VFHRFSMWHV MRKAREIFED FMENGPVMEA DLTCLIANCL TIEEFEDGWK TMLEKYDAPP 480 NEDLNLMYQT RLMWVPVYFK HAFCPFIRST GRSESTDTIF KEHGLRKDAI ENFFCQYDIF 540 QKNVISPEDG YGLESTQKKT MYCTRQPIER HAAEVYTMGM FLKFQKELLD ASAFNVFEIE 600 SGRVYAVKKT LDYEEAEFPG DSFSVEVDLG NNMFNCICSK FERDGMLCCH VLRLLTQFGV 660 NVIPENYIRQ RWTKKFREEL QKLHGTEKTR STVSQNAL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G033900.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975156.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X5 | ||||
TrEMBL | A0A368RRF0 | 0.0 | A0A368RRF0_SETIT; Uncharacterized protein | ||||
STRING | Si009620m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-79 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G033900.4.p |