PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G029600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 1180aa MW: 126750 Da PI: 6.2502 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.1 | 9.8e-09 | 449 | 491 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE +++ + ++ +G++ +k+I++ + ++t+ +c++++ k+ Seita.7G029600.1.p 449 AWSQEEKDIFSEKITTFGTD-FKKISSFLS-HKTPTDCIEYYSKH 491 7*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 13.858 | 445 | 496 | IPR017884 | SANT domain |
SMART | SM00717 | 4.1E-9 | 446 | 494 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-10 | 448 | 494 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.41E-6 | 449 | 491 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-6 | 449 | 493 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.9E-6 | 450 | 499 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1180 aa Download sequence Send to blast |
MNRGFPWSPY GWGPSYWNQN QNQQQWAWHV RDPYWNQRTR FSNVGWNAGV PQPGGLMGHP 60 SYNSPRPLGI QRDVAPMHYF CRPPRPPPPQ RGRVSPGGQS SNSSGQHRGR DLDRDAGKGL 120 LGPGDDPSSQ RGETPFLPPK KRAEFKSPEL HSGQHGNGSD DNSSKSATEK PLDPVQETPD 180 PPPASSTKTG LGSLVPPAVS APTPLESPDV DVCMTERNDQ GDVLGLGGYM EKKRLLSKTL 240 FADVEGEVKV TTKKTRLGWG QGLAKYEKQL KQQNGQKLVA DGDNGETGNG AVVYTATAPA 300 SSDRQTPTPD VGGSSNPCNN SLSMTETVTC TATVPISSHG SSPPPAGGGN SDISNSSMST 360 TQGISCPAST HGCSLPSGAH ISYGSNAKST KVQDISHKLI SQPINKIQNS ARMPAIIIRK 420 LQKPREFLNK NILFKEPQTN KLQGSGFKAW SQEEKDIFSE KITTFGTDFK KISSFLSHKT 480 PTDCIEYYSK HYKSVCSKKS NKCVPTTKQS QEKCKNVNDA APYMSGIATV TATKNYKKMK 540 TVEEDLKKPA NQICHESTAH LQSHSLPDKG HHVESTIEEY EHVTGNVLVG EMNAPSLHGM 600 NSPTTNSSEA ARLTIPKTEV AEFVSNVDSA TCIIQSYSKV KENVPQPVTS ADHGDGENYQ 660 AGGSSGQGTS EIIKYLSESG QKIPNVTTED SQTISGEENP ELCAVSKECN DAAEHSWNDD 720 TETNSNTHND NNAPSDMENP TNDNNPCIST NSAELSGHHE LVQPLEDSEA LKIGSKENND 780 KAIRDEKNPE HSIASKEGSG ILLGCIVNSQ RDKEVVDIIS SPEGSDLNVP PTLASLGASN 840 NSHLSSTSSS AALQTVYAKS SRGEVDMDLN LPLHVAPPDL ASVALDSNRA EASMDLHEPR 900 QTIDVAAIME HELSIRARET IDVGGDSEAA NDVTHVQEIH QSSQTTVAET SHHPANQPGC 960 IMLFGQVIYQ APSSSGTNPT SSQGNQIVAS SRDIPSETVV PFRAGSGQLY PSGPSIIWRS 1020 APVNLGQQTV LSNNTMNLDQ QAVLSNNTMN LGQQAVLSNT TMPYGSTSGA AWRPLQLRNS 1080 ALVNMSQQRQ YVHMMMQYSM MRGAVPYHLR QESSSSSGGG LINFNNFNPG QQQWPSNILD 1140 TSRVVMGYPC LPGSTQDQAP TAIMPSGINI EGASTSNTG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G029600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A368RRQ9 | 0.0 | A0A368RRQ9_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Gb02524.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20991 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 4e-11 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G029600.1.p |